K24650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24650

Determination of introduced cDNA(s)

  • J033115N17 - Rice Full-length cDNAs - Original: J033115N17

    full reading [+] show sequence

    Nucleotide sequence: J033115N17 - full reading 
    TCCCCTTCTG ACCCTCCTGA CCTCCCCGAG CCCCAACACG ACGACACGGA 
    GCACAAACCT CCCGCGCCTC ACCACTTCCC CTCGCCTCCG CCGCCCCCAC 
    TTGGCCACAT CTCCTCCGGT CTCGGTCCCC GCGGCGGCGG CGGCGGAGGA 
    GCTCGCCCAT GTTGTTCCGC GGACTTCTCG CTTGGGCTGT CGGGTAGGGA 
    ACCCTGAGAA AACGCATACC GGCGGTCGCG GAGAGCAGAG CAAAGGCGGG 
    GGATGGGGTA CCTGCCGTCG CTGGGCGGGA AGGCGGCGCA CCTGGTGTCC 
    GACCTCGCCA CCGTCATCCT CAACCCCGTC TCCGAGCGGG AGAGCCAGCG 
    CCACCCCTCC CACCTCCCCG AGGCCACTGA AGTGCAAGAA AATATCTATG 
    AGGATGACGA TGATGATAAT TCAGTCAAGA ATTCTGAGAT TCCTAATGGC 
    CCTGACACAT CTTCCTTCAG AGCATTCCTG ATGTCATTTA TGTCGTCATC 
    AAACTCCAGC AGTGATTCTA TAGAAATCAT ACCTGAGCAC AATATGAATA 
    TGGAATATCC AACTTTAACA CCTGTTGGGA AGGGAAGCAA TGGAAGGAAG 
    GGCCTGTTTA GCAGAGGGAA GCATTCCATT GGAAAAATCA TTAACAAAGC 
    AGGCAGAATT GGTGGTTTCA GACAAAAACC CAGCTACAGC ATTGATGGTG 
    AAACTGTTCA AACAGAATAT GATGCACCTG GGTTGGAACT TAAGGGATCA 
    AAGGAATCTG CTTCACATGA TAAGTTACCA GCCATGTCTG AACCATCAAT 
    GCTTTTGTCT GAAACAATGC GAACTGTTCT TTATACATCT CTTCCTGTAC 
    TTGTCCAAGG AAGGAACTGG ATGTTGGTAT ACAGTACCTG GAGACATGGA 
    ATATCTTTAT CTACTCTGTA TAGAAGGAGC ATGCTTTGTG CAGGCTACTC 
    ACTTTTGATA GTTGGGGATC GAAAAGGAGC GGTTTTCGGT GGGTTGGTTG 
    AGGCCCCATT GCAACCATTA ATAAAAAAGA AGTATCAGGG GACCAACAAC 
    TGCTTTGTGT TCACCAATAT AGCTGGCCGT CCTGTTATAT ATCGTCCAAC 
    AGGTGCTAAT AACTATTTCA CATTTTGCTC CACCGATTAT TTGGCAATGG 
    GAGGTGGTGG TCACTTTGCA CTTTATCTTG ATGGAGACCT TCTGAATGGT 
    TCAAGTTCCA CTTCAGAGAC ATTTAACAAC CCGTGCTTAT CACGTTCCCG 
    GGAGTTTGAA GTCAAAGATG TCGAGCTATG GGGCTTCGTC AATGCTTCCA 
    AGTATGATGA GATGCTCACT ATCTGCCGTA CTGAGAAGCA AGGGATCTGG 
    AATCTGTGAC TGTCTGTTTA CAATTGATCT GAGCTGTTTA GTGCTTGTAC 
    CTGATGCCAA CCCATCCTGG TGGTTTGTAC AGTTTTGTAG TTCTGTCTGT 
    TAAGTATAGT ATATATAGGC CTTGTTGGAG TTCTGTCTGT ATGTATAGTA 
    AAATGCCCCT TGTAAAACAA GTTCATCAAC GGAGTTATGG AGCTTAAAAT 
    GAGTAACTCT GAAACATG

    Gene models with high sequence identity

    1. AT4G39870.2 [+] show detail - TLD-domain containing nucleolar protein
      E-value: 3e-80; Score: 296.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TLD 8.9e-31
    HMMPanther NUCLEOLAR PROTEIN-RELATED 5.2e-92
    HMMPanther NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIV 5.2e-92
    HMMSmart TLDc 5.6e-33

    See the detailed result >

    AT4G39870.2

    Model type
    Protein coding
    Short Description
    TLD-domain containing nucleolar protein
    Computational Description
    TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT2G05590.2).
    Link
    InterPro Scan - TAIR