K24742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24742

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24742

Determination of introduced cDNA(s)

  • J033115J12 - Rice Full-length cDNAs - Original: J033115J12

    full reading [+] show sequence

    Nucleotide sequence: J033115J12 - full reading 
    ACTATATTTT GGTGCGATGT TTATGGCCTG CTTTTTGGCA TTTGTCTGTA 
    GCTGTATCAA ATTATCAATG TTTTATCCAA GAAGACCGAA GAAATGGAAA 
    AGATGAAGGT TGATTCAGAT CAAGAAATTT TGTTGTTGAA GAAATTGGTA 
    AAGGTTATGG AAAGAAAAGT TGAACATCTG GAACAGCAGC TTGAGAAATC 
    GCATAGCTCT TCAGCACCAC TCTTCGGTGT AACAAATGAT GATGTAGAAG 
    GGCCATCAAT ACTCCTAACA GGTGGCCATA ATGGCATTAA CTGGCTGTCA 
    TCCCTTGATT CATATTGCCC TGCAACGGAC ATACTAGAAA CTCTAATGCC 
    AATGAGCTCA GCCCGTGCAT ATGCGGCTGT TGCCACATTA AAGGACCATG 
    TCTTCATTTT TGGTGGTTGG AATGGCATTC GCAGTTTGTG GTACAACACA 
    GTGGAGTGCT ACAACAGGGG AGCCAATAAG TGGATAGGAT TGCCCTGCTT 
    GAATCATGAG AAAGGGCATC TTGCTGGAGC TACCTTGAAT GCGATGTGCT 
    CCTGCTGCGG CTGAATTAAA TGGCGTTCTC TATGTAATTG GTGGTTATGA 
    TGGCAACATG TACTTACAGT CAGCAGAAAG GTATGATCCA AGGGAAGGCT 
    TCTGGACCCA ACTTCCACGT ATGCGGACAA GAAGAGGATC CCATTCAGTA 
    GTTGTCTTGG GGGATTCACT ACATGCTCTG GGTGGCCTGA ATAGAAATAC 
    CACGTTTTCC AGCGTAGAGA TTTTTGACAC CCGTGCCAAC TCATGGAGAA 
    GGGGGAGCCC ACTCAGCGTC CCAAGAGCAC ACGGATGTGC GGTTACATTG 
    GACGGCAACG CATACCTCAT TGGTGGTATC CAAAGCAGTG AAGAATACGT 
    TGAAACTGTT GAGGTTTACA AGGAGGGCCA AGGCTGGTCC ATCTCTGGTT 
    CCAAGGCATT CGGGAAGAGA GCTTTCGCAT GCGCCGTTGC CATTTGACAG 
    GATTGCAGAA GTGCAGATGA ACCCCCGGGC CGGTTTTGTA CAGCACCAGT 
    CCCCAACCCC GCCTCACAGT ATTACCTTCT CTCAAGCGAA ATATTGCCGC 
    TCATTGCTGA GCACTGACGC CTGACGGCCC ATCCATTCTG TGCATCCCAG 
    TCATACGGTT TTTACATTTT AGAAACAACA CCGTAGCGAG TTCTGGTATG 
    CGTTAACTCT GCCCGTTGTT GTTTCTCACT GAAGATAGGT GTTGTTGGTT 
    GTCACCTGAT TGTAGCGGAG CAAACTGAAC TGTCTACAGG ACACTAGTTA 
    CTTAGAGAAG TTCGAATGAA CAAACTTTAG CTGGTGATAG CAGTACATAT 
    GGGAGGCTTG GAAGCTGGTA TAATTTTTGA TTTTTTTTTT GAAGCAACTT 
    TTCAGGTTCT GCTTGCTGGG AGCAGGCGGG AATAATAGCT GCAACAATTT 
    CGCCAGC

    Gene models with high sequence identity

    1. AT5G01660.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch r...
      E-value: 6e-44; Score: 79.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Kelch repeat type 1 1.4e-05
    HMMSmart Kelch repeat type 1 0.00042
    HMMSmart Kelch repeat type 1 3.6e-15
    HMMSmart Kelch repeat type 1 1.2e-09
    HMMPfam Kelch repeat type 1 1.6e-08
    HMMPfam Kelch repeat type 1 1.2e-12
    HMMPfam Kelch repeat type 1 7.3e-09
    HMMPfam Kelch repeat type 1 0.00014
    Coil coiled-coil 0
    FPrintScan Kelch 3.8e-06
    FPrintScan Kelch 3.8e-06
    FPrintScan Kelch 3.8e-06
    HMMPanther KELCH-RELATED 2.4e-10
    HMMPanther Kelch related 2.4e-10
    HMMPanther KELCH-RELATED 1e-27
    HMMPanther Kelch related 1e-27
    superfamily Galactose oxidase/kelch, beta-propeller 3.7e-13
    superfamily Galactose oxidase/kelch, beta-propeller 2.1e-30
    Gene3D Kelch-type beta propeller 2.8e-12
    Gene3D Kelch-type beta propeller 5.3e-31

    See the detailed result >

    AT5G01660.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR