K24801

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24801

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24801

Determination of introduced cDNA(s)

  • J013075C21 - Rice Full-length cDNAs - Original: J013075C21

    full reading [+] show sequence

    Nucleotide sequence: J013075C21 - full reading 
    GGGGGGAGAG AGAGAGAGAG CTCCATCTTC CACGGCGACG ACGACGGCGG 
    CGGCGGCGGC GAGGGGAGGA GGAGATGAAG CTGAAGCAGC TGGAGGGTCT 
    CCTCGGAGAC CTGCAGCAGT TCACCGCACC CAAGGTGGAG CTGGAGCAGT 
    ATGCAACGGG CCCTCACATC GCGTCGCGGA TGCTCTACAC GGCGGAGAAT 
    AGTTTTGATG ACATAACTGG CAAAGTGGTG GCTGACTTTG GCTGCGGGTG 
    TGGCACCCTG TCTGTGGCAA GCTCTCTGCT GGATGCTGAG CATGTTGTTG 
    GAATTGATAT TGACCCGCAA TCCCTTGAAC TTGCTCAAGA AAATGCTGCA 
    GATCTAGAGC TGGATATCGA CTTAATTCAG TGTGATATAA AGAATTTAAA 
    TTTGAGAGGC CTTCTTGTTG ACACTGTTGT CATGAATCCT CCCTTTGGGA 
    CAAGCAGAAA AGGAGCTGAC ATGGAATTCA TTTCTATGGG CATGAAGGTT 
    GCCACTCGAG CTGTCTATTC GCTACACAAG ACTTCTACCA GAGAACACAT 
    CAAGAAGGTA GCCTTGCGCA ACTGCAATGC CATAAGTGCC GAGGTTCTAT 
    GTGAGCTCCG CTACAACCTA CCACGGACAT ACAAGTTTCA CAAACAAAAC 
    GAGGTTGATA TCGCCGTCGA TTTTTGGCGG TTCGTGCCAC GAGCCCGAGA 
    CGAAGGTAGC ACTGCATGCT CTGTTACCAA CCTTAAACAG AGAAGAATGC 
    ACAGATGATC CTAAAACATT TTCGTAGCGG TTTTTTAGCG GTTCAGCCGT 
    GTTGTGTCAT CTCTCGCGCA GTTGGCCATG TGATGAACTT GGATCTTTTG 
    ATTGCGAATT TGTGATTGCA ACGAAGGTAT ATGTGTTCGT ACAAGTACAA 
    TGCTCTTTTT TTTTTCTTTT GAAAGTGGTC GTTTAACATT TTGATGATGC 
    GTAATAATAG TCCATCTCTC TGAGCG

    Gene models with high sequence identity

    1. AT4G28830.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 3e-88; Score: 322.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan DNA methylase, N-6 adenine-specific, conserved site 0
    Coil coiled-coil 0
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.6e-25
    HMMPfam Methyltransferase small 2.3e-13
    HMMPanther UNCHARACTERIZED 3.6e-91
    Gene3D no description 3.1e-62

    See the detailed result >

    AT4G28830.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 3625 Blast hits to 3623 proteins in 1319 species: Archae - 217; Bacteria - 2993; Metazoa - 122; Fungi - 3; Plants - 52; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR