K24818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24818

Determination of introduced cDNA(s)

  • J033117G12 - Rice Full-length cDNAs - Original: J033117G12

    full reading [+] show sequence

    Nucleotide sequence: J033117G12 - full reading 
    GGCTTCTCCG CAGCCGCCGC CGCCGCCGCC GCGTTCCACC ACCTACCACC 
    CCCACCGGAG AAGAAGAAGA AAAAGGAGAG GAAGATGGTG TCGGGTTCGG 
    GGCTGTGCAC GCGGCGGGTG GTGGTGGACG CGCGGCACCA CATGCTGGGG 
    CGGCTGGCGT CGCTGGTGGC GAAGGAGCTC CTGAACGGGC AGCGGGTGGT 
    GGTGGTGCGG TGCGAGGAGA TGTGCATCTC CGGCGGGCTC GTCCGGCAGA 
    AGATGAAGTA CCTCCGGTTC CTCCGCAAGC GGATGAACAC CAAGCCCTCC 
    CATGGCCCCA TCCACTTCCG CGCCCCCTCC CGCATCTTCT GGCGCACCGT 
    CCGCGGCATG ATCCCCCACA AGACCCCCCG CGGCGAGGCC GCCCTCGCCA 
    ACCTCAAGGC CTTCGACGGC GTCCCCCCTC CCTACGACCG CACCAAGCGC 
    ATGGTCGTCC CCGACGCCCT CAAGGTTCTT CGCCTCCAGC CCGGCCACAA 
    GTACTGCCTC CTCGGCCAGC TCTCCAAGGA GGTCGGCTGG AACTACCACG 
    ACACCATCAG GGAATTGGAG GAGAAGAGAA AGGAGAAGGC TAAGGTTGCA 
    TACGAGAGGA GGAAGCAATT AACAAGGCTT CGTGTCAAGG CTGAGAAAGC 
    TGCTGAGGAG AAGCTGGGTT CTCAGATAGA TATTTTGGCC CCAATCAAAT 
    ATTGATTGGC CTGATTGTCA TCAATTTTCT TTTCGCCTTT ATAATATTTC 
    TGCTTATCGG TACCATGAGA AGTGAAATGA TATGTCTGTC GAAACATGAT 
    AATTTTGTTC CAATTGAATA CTAGAGAGTT ATATTGGCTT GATCTGATTT 
    TCCCTCTTG

    Gene models with high sequence identity

    1. AT3G24830.1 [+] show detail - Ribosomal protein L13 family protein
      E-value: 8e-90; Score: 327.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L13 0
    HMMPfam Ribosomal protein L13 9.2e-26
    Gene3D Ribosomal protein L13 1.4e-46
    superfamily Ribosomal protein L13 1.4e-50
    HMMPanther Ribosomal protein L13, eukaryotic/archaeal 4e-132
    HMMPanther Ribosomal protein L13 4e-132
    HMMTigr Ribosomal protein L13, eukaryotic/archaeal 4.8e-75

    See the detailed result >

    AT3G24830.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L13 family protein
    Computational Description
    Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G07110.1); Has 2057 Blast hits to 2057 proteins in 651 species: Archae - 298; Bacteria - 471; Metazoa - 343; Fungi - 197; Plants - 326; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR