K25043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25043

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25043

Determination of introduced cDNA(s)

  • J013091O21 - Rice Full-length cDNAs - Original: J013091O21

    full reading [+] show sequence

    Nucleotide sequence: J013091O21 - full reading 
    GAGTAGCACC TCCTTCCCCA AGAATCGCGC GCGCGCGCCT GCCTCGTCGC 
    CGGCGGCCAT GGCGCTCCTC CTCCGCCACT CTCCCAAGTT GCGAAGAGCG 
    CATGCTATCC TCGGATGCGA GCGTGGGACT GTTGTTCGTC ACTTCTCATC 
    CAGCACTTGC TCCTCTCTTG TAAAGGAAGA TACTGTATCA AGTTCCAACC 
    TTCATCCAGA GTATGCAAAA AAAATTGGAG GATCAGATTT TTCCCATGAC 
    AGGCAGTCTG GAAAAGAGCT TCAGAATTTC AAGGTCTCAC CGCAAGAAGC 
    AAGTAGAGCC TCCAATTTCA TGAGAGCATC CAAATATGGA ATGCCAATTA 
    CTGCTAATGG GGTACATAGT TTGTTCTCAT GTGGGCAGGT AGTACCGTCT 
    AGGTGTTTTT CAAGTGGAGC AGATTTGCCT CCACATCAGG AAATCGGAAT 
    GCCTTCACTC TCCCCTACCA TGACTGAGGG AAACATTGCA AGGTGGGTGA 
    AGAAAGAAGG AGATAAAGTC TCACCTGGTG AAGATCTTTG TGAAGTAGAG 
    ACTGATAAAG CGACAGTGGA GATGGAATGC ATGGAGGAAG GCTACCTTGC 
    TAAAATTATC CATGGAGATG GTGCCAAAGA AATTAAAGTT GGTGAGATTA 
    TTGCCGTAAC CGTGGAAGAA GAGGAAGACA TCGGCAAATT TAAGGATTAT 
    AAGGCTCCAT CATCTGCTGA ATCTGCAGCT CCAGCCGAAT CGAAGCCCCA 
    ATCTGAGCCC ACAGAACCAA AAAAGGAGAA AGAGCAGCCC AAGGCTCCTG 
    AGCCAAAGGC TACAAAGACA GAAGAATCTT TTCTTTCAGA GGATCGCACA 
    TTCTCCAGTC CAATTGCAAG GAAATTGGCA GAAGACAACA ATGTACCACT 
    GTCAAGCATA AAAGGTACTG GCCCCGATGG GCGAATTTTG AAGGCAGATA 
    TTGAGGATTA CTTGGCTTCT GTGGCCAAGG GTGCCAAGAA GGAAACAGCA 
    GCAGCTCCTG GACTAGGCTA TGTGGATCTT CCTAATACGC AAATAAGGAA 
    GGTTACTGCA AACCGCCTGC TGCACTCCAA GCAAACCATT CCTCACTACT 
    ATCTGACAGT TGATACTCGT GTTGACAAAC TTATTAAGTT GCGAAGTGAG 
    TTGAATCCTC TGCAGGATAC CTCTGGTGGC AAGAAGATAT CCATAAATGA 
    TCTTGTTATC AAGGCCGCAG CATTGGCTCT TCGTAATGTT CCTGAGTGTA 
    ATAGCTCTTG GATGAATGAT TTTATTCGCC AATACCACAA TGTGAACATC 
    AATGTTGCTG TACAAACTGA GGATGGCTTG TTTGTTCCCG TAATAAGGGA 
    TGCTGACAAG AAGGGCCTAG CCACTATCGC TGATGAGGTG AAGCAACTGG 
    CTCAGAGAGC AAGGGACAAC AGCCTTAAGC CAGAGGATTA TGAGGGTGGC 
    ACTTTCACTG TGTCAAACTT GGGAGGCCCT TTTGGAATTA AGCAATTCTG 
    TGCCATCGTA AATCCTCCAC AATCAGCAAT TTTGGCTATT GGCTCAGCTG 
    AGAAGAGGGT GATCCCTGGA GCTGAGGGTC AGTTTGAAGT TGGTTCGTTT 
    ATGTCAGCAA CATTGAGCTG CGACCACCGG GTCATTGACG GTGCCATTGG 
    TGCAGAATGG ATGAAGGCGT TCAAGGGCTA CATCGAGAAT CCAACGACCA 
    TGTTGCTGTA AATGAGGATG ACGGGGAGAG TTATTTTTTG TAGGTTTTCA 
    CAAATAAGGC TCACAATAAC GGTGTCTTCG TTCTTTTCAT TGTTTTACAC 
    TGTATAACCT CGGCACGGCC CCATGAGGTC TTGAAACCAA AGAGCAAACA 
    TACATAGGAG TCAGCACAGC ATCCCTTGTC ATCTCTGTAA ATGCATTTTT 
    ATCCTGAGCT AAATCACAAT TTACAGCGCG TAGTGG

    Gene models with high sequence identity

    1. AT3G13930.1 [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
      E-value: 5e-177; Score: 618.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0
    HMMPanther DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT 5.4e-240
    HMMPanther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE- 5.4e-240
    Gene3D no description 7.6e-30
    Gene3D E3 binding 5.5e-08
    Gene3D no description 8.5e-75
    ProfileScan Biotin/lipoyl attachment 14.756
    HMMTigr Dihydrolipoamide acetyltransferase, long form 7.2e-203
    superfamily CoA-dependent acyltransferases 2e-81
    superfamily Single hybrid motif 1.4e-28
    superfamily E3 binding 4.3e-12
    HMMPfam 2-oxoacid dehydrogenase acyltransferase, catalytic domain 1.5e-81
    HMMPfam Biotin/lipoyl attachment 5.9e-18
    HMMPfam E3 binding 3.6e-15

    See the detailed result >

    AT3G13930.1

    Model type
    Protein coding
    Short Description
    Dihydrolipoamide acetyltransferase, long form protein
    Computational Description
    Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, copper ion binding; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2); Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106; Bacteria - 12026; Metazoa - 730; Fungi - 474; Plants - 369; Viruses - 0; Other Eukaryotes - 7720 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR