K25044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25044

Determination of introduced cDNA(s)

  • J023086E09 - Rice Full-length cDNAs - Original: J023086E09

    full reading [+] show sequence

    Nucleotide sequence: J023086E09 - full reading 
    GGCCGAGACA GCCTCGCCTT TGCCCTACTC GTCTCCTTCC TTCCTTCCGC 
    CGCCGCCGCC GCCGCCGCGA GGGCCATGGG GTACACCAAG GAGCAGCTCC 
    TCGCGCGACT CCAGGAGCTC AACATTGAAT TCTCGTGCTA CGATCACCCG 
    GTTGTGTTGA CGGTGGAGGA ACAGGCCAAA CATGTTGGGC ATTTAGGAGG 
    TGCTTTGAGT AAAAATTTGC TACTGAAGGA CAAAAAGCAT AGGCTGTACG 
    TTGTTTCTGC CCTTGCTGGC ACCAAAGTTG ACATGAAAAT TTTATCACAG 
    CGTCTTGGTT TGGGAAAAGG TGGTCTGCGG ATGGCTCCTG AGGAAAATTT 
    GCTTGAAGTG CTTCAGGTAC CCTTAGGCTG TGTTACTCCA TTTGCACTAC 
    TTAATGAGTC TGCAAGTGCT GTCTCACTAC TACTGGACCA AGGTTTCAAG 
    TCAAAACAGA GCTGCTACTT CCATCCACTG ACAAATGATG TGACAATCGC 
    TCTCAGCTCA AGCAATCTGG ACAAGTTTCT CATGTCCATT GGGAGGCAAC 
    CAGCTTATGT AGACTTAGAG GCTTCACCAG TTGTAGGCAA GGATAATCCT 
    CCTGATCTAG CAGATTTTGT ACCATCAGGT GTCCCAAATT CTGCAGAACC 
    AATTGAGAAG GTCACACCTA CAAATGTTCC TCGTCAAAAT GATGTGCCCA 
    AAGAGAAAAC ATGTCTTCCT GTGAAGGCTA AGCCTAAAGT TCAGAACAAG 
    GGTGCAGAAA AGACGCAGAG CAAGATACCT ACAAACGGAG CTAATGTTGA 
    GAAATTTGTA AATGATGTAT TTGACATCAT GTCCCCGTTG TTCCTTTCTG 
    AGGTATCAAA GAAACTGAAT GTTAAGCAGG AAGAACTTTC TTCTATATTT 
    GATGGCTTTA AAGAACAAGC CACTATTGAT TTGGAGAGTG TAACGACGAG 
    TCTGAAGAAT GCAGCATACA CCGCTGGATT TGAGGCTGGC TTCGAGACTA 
    TGCTCAATTC AGGTTTAAAA GGACAGGCTT CTCGGAAGTA AATTGTTTCT 
    TTTAATACAA TGGACATAAG TCGATTCAGT GAATTTTGTA TGACATTTAG 
    TGTAAAATCG ATCAAATTAT AAATTATGCT TTCCTTTG

    Gene models with high sequence identity

    1. AT1G44835.2 [+] show detail - YbaK/aminoacyl-tRNA synthetase-associated domain
      E-value: 3e-81; Score: 299.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D YbaK/aminoacyl-tRNA synthetase-associated domain 6.6e-50
    superfamily YbaK/aminoacyl-tRNA synthetase-associated domain 1.8e-44
    HMMPfam YbaK/aminoacyl-tRNA synthetase-associated domain 1.1e-25

    See the detailed result >

    AT1G44835.2

    Model type
    Protein coding
    Short Description
    YbaK/aminoacyl-tRNA synthetase-associated domain
    Computational Description
    YbaK/aminoacyl-tRNA synthetase-associated domain; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase-associated domain (InterPro:IPR007214); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR