K25102

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25102

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25102

Determination of introduced cDNA(s)

  • J013041H23 - Rice Full-length cDNAs - Original: J013041H23

    full reading [+] show sequence

    Nucleotide sequence: J013041H23 - full reading 
    GGCCGCCCGC CACCGCGCTC TCCCTCTCCC CCCAATTCCA TCCCTCCACG 
    CCACGATCGC CTTCCGCAAG GTTTCTTCTT CAGTGCACAT GTGAAACTGT 
    ACTTCACCTC CCATATATAA TTCAGTGCAG AGAGCATTCT TGAATAAGTA 
    TGAACCCTTA TTTTGTTGGT CTTCTCGTCC CAATTGCGGT ATCTCTTCTC 
    CTACGGAAGA GGAGAATGGT TGGGAAGATG AGGGCACTGC CAGTTGATGT 
    GGGTGGAGAG CCCGGGTATG CAATCCGCAA CTATCGATTC AAGCAACCGG 
    TTGAAACTCA CTGGGAAGGT GTCACCACGC TCGCCGAGTT GTTTGAGCAG 
    TCCTGCAAGG ATTATGTCAA CATGCCGCTC CTCGGCACCA GGAAGCTCAT 
    CTCCAGGGAA CAGGAATCAT CACTAGATGG GAGGTCCTTT GAGAAGCTTC 
    ATCTTGGAGA GTATGACTGG AAGTGCTACG CTGAGGTATT CAAGAGTGTT 
    TGCAACTTCG CATCTGGACT AATTCGGCTA GGCCATCAGA AGACTGATCG 
    TGTTGCTATT TTCGCCGAGA CGCGGGCTGA GTGGCAAATT GCTCTGCAGG 
    CATGCTTCAG GCAAAATATT ACAGTTGTCA CAATCTACGC CTCCTTGGGA 
    GAGGAAGCAC TGTGCCACTC ACTAAATGAG ACAGAGGTTA CTACTGTTGT 
    ATGTGGTCAG AAAGAACTGA AAAAAATGAT TGATATAAGT GGGCAGCTTG 
    ACACAGTAAA GCGAGTTATC TATATCAATG AGGAAGGAAT CTCAGCTGAA 
    GTTTCTTTAG CTCAAAAAAG CACTAGCTGG ATAATTGAGC CGTTTGAGGA 
    TGTAGGTAGA TTGGGAGATA CAGCACCTGT TGATGCAAAC ATGCCTCTCC 
    CATCTGACGT AGCAGTGATA ATGTATACAA GCGGTAGCAC CGGATTGCCT 
    AAGGGAGTAA TGATGACCCA TCGGAACGTC CTGGCTACAC TTTCAGCAGT 
    TATGACCATT GTGCCTGAAA TTGGTAAAAA GGATGTATAC CTGGCCTACC 
    TGCCACTTGC ACACATTCTT GAGTTGGCAG CTGAGGCACT CATAGCTGCT 
    GTTGGGGCTT CCATAGGATA TGGATCACCC TTGACCCTGA CTGATACATC 
    AAACAAAATA AAAAAGGGAA CACTGGGTGA TGCTTCTGCA CTCAAGCCAA 
    CACTGATGAC CGCTGTACCT GCTATACTTG ATCGTGTTCG TGATGGTGTG 
    AGAAAGAAGG TGGATACAAA GGGTGGTGTA GCAAAGCAGT TATTTGATGT 
    TGCCTATAAT CGTCGACTTG CCGCAGTCAA TGGAAGTTGG CTGGGTGCAT 
    GGGGATTAGA GAAACTCTTG TGGGATATGC TTGTCTTCAA AAAGGTGCGA 
    GCAGTTTTGG GAGGAAAAAT TCGCTTTGTA CTTTCAGGTG GAGCACCTCT 
    ATCAGGAGAT ACCCAGAGAT TTATCAATAT ATGCCTTGGG GTTCCAATAG 
    GGCAAGGGTA TGGTCTTACT GAGACATGTG CTGGAGGAAC ATTTTCTGAG 
    TATGATGACC CATCTGTTGG TCGCGTTGGT GCTCCACTAC CTTGTTCGTA 
    CATTAAGCTG ATTGACTGGT CAGAAGGTGG ATACTTAACA AGTGACTCCC 
    CAATGCCTCG AGGAGAGATT GTCATTGGTG GTCCCAATGT AACTAAAGGC 
    TATTTCAAGA ATGAAGCTAA AACAAATGAA GTCTATAAGG ATGACGAAAA 
    AGGTATGCGA TGGTTCTATT CTGGTGACAT CGGGCGCTTC CACCCAGATG 
    GCTGCCTTGA AATCATTGAC CGTAAAAAGG ATATTGTGAA GCTTCAACAT 
    GGTGAATATG TGTCTCTCGG GAAGGTGGAG GCTGCTCTGA TTGTGAGCCC 
    ATATGTGGAG AACATCATGA TCCATGCTGA TCCTTTCCAC AGTTACTGTG 
    TTGCACTTGT GGTAGCTGCA CACAATGAGC TGGAAAACTG GGCTTCGCAG 
    CAGGGAGTTA CATACACCGA TTTCGTAGAT TTGTGCCAGA AGCCAGAGGC 
    TGTTAAAGAA GTGCTTGGAT CTCTATCAAA GGCTGCGAAG CAAGCGCGAC 
    TGGAGAAGTT TGAGATCCCG GCCAAGATCA AGCTGATATC TGAGCCATGG 
    ACCCCGGAGT CTGGCCTTGT CACTGCTGCC CTCAAGCTCA AGAGGGAAGT 
    GCTCAGGAAG ACATATGAGG ATGATCTTGC TAAACTATAC GCCTGATGAT 
    CAATGCTGAA TTGCTGATTA AGCCTACTCG ACGTTTTGAC ACAACCAGCT 
    ACCGTAGGAC AGAGCTCTTG TGAGCAAACT GAAGATGCTG ATACCGGCAG 
    GAGGTAGCCT GAAATTTTGG AGCTGTGGTT GTTTGATCTT TTGGAGCTAG 
    CACAATTATG TGTAGCCTCA TTTCACACTT ACTTCTGTGT CTCTGCCATA 
    TTCTCTTGTG AATTTACATT GTTCAAAGGA AAAAAAAAAG GCATTCT

    Gene models with high sequence identity

    1. AT1G77590.1 [+] show detail - long chain acyl-CoA synthetase 9
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LONG-CHAIN-FATTY-ACID COA LIGASE 1.4e-253
    HMMPanther ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBE 1.4e-253
    superfamily Acetyl-CoA synthetase-like 1.7e-121
    PatternScan AMP-binding, conserved site 0
    Gene3D no description 2.2e-34
    Gene3D no description 0.00057
    Gene3D no description 1.4e-14
    HMMPfam AMP-dependent synthetase/ligase 1.4e-110

    See the detailed result >

    AT1G77590.1

    Model type
    Protein coding
    Short Description
    long chain acyl-CoA synthetase 9
    Curator Summary
    Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.
    Computational Description
    long chain acyl-CoA synthetase 9 (LACS9); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G04350.2); Has 68698 Blast hits to 57242 proteins in 3549 species: Archae - 1129; Bacteria - 47028; Metazoa - 2860; Fungi - 3365; Plants - 2152; Viruses - 2; Other Eukaryotes - 12162 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR