K25120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25120

Determination of introduced cDNA(s)

J023083O08 - Rice Full-length cDNAs - Original: J023083O08

full reading [+] show sequence

GGTAGGCGCC ACGTCAGCCA AAACCGCTCT TAAAACCACC GAGGGATCTC 
ATCTGCACCG GTTTTGATAG TTGAGGGACC CGTTGTGTCT GGTTTTTCGG 
TTGAGGGACC TCAAATGAAC TTATTCCTTT TTTTTTTTTC GAACCTTCTC 
GAGAGGAGAG GCGTCGGGGC GGGGGGAATG GCGTCGTGGG AGGAGCAGCT 
GCGGGACGAG CTCGCCGGCC GAGACCTCGC CGTCGCCTCC GTCCCCGGGA 
AGGGCCGCGG CCTCTTCGCC GCACGCAGCT TCTTCCCAGG AGAAGTCGTT 
ATTTCGCAAG AGCCTTACGC TTCTACACCA AACAAGATTT CTGTGGGCTC 
CAACTGCGAC AATTGTTTCG CCTCCAGAAA CCTGAGGAAG TGCTCCGTTT 
GTCGAGTTGC TTGGTACTGT GGGAGTGCGT GTCAGAGAGA AGAATGGAAG 
CTTCATCAAC TTGAATGTCG AGCAATCGCC GCGCTTACAG AGGATAGAAA 
GAAGATGCTT ACTCCCACAA TTCGTTTGAT GGTGCGGCTT GTACTTAGAA 
GAAAACTGCA GGATGACAAG GCTATTCCAT CTTCAGGAAC AGATAACTAC 
AATCTAGTGG ATGCATTAGA ATCCCACCGC ATAATATAGA CATCTCCGAG 
GTTGATAAAA ATCAACTGGT TTTATATGCT CAGATGGCCA ATCTTGTCCA 
ACTGATTCTT CCTTCATTCG AGCTTGATCT TAAGGAAATT ACACATACCT 
TTTCCAAGTT TGCCTGCAAC GCTCATACCA TATGTGATCC TGAACTGAGG 
CCCCTTGGGA CTGGACTATA CCCTGTTTTA TCTATTATTA ACCACAGTTG 
TGTACCAAAT GCAGTTTTGA TATTTGAAGG TCGGACAGCA TATGTTCGTG 
CATTGCAACC TATAAGTAAA AATGAGGAGG TATCAATAAG TTACATTGAA 
ACTGCGGCAA CCACTATGAA GAGACAGGAC GATCTCAAGC ACTACTACTT 
CACTTGCACA TGTCCCCGTT GTGTTAAGGA TTCTGAGGAA GATGCGCTCC 
TTGAGGGATA CAGATGCAAT GACCAAAAGT GTGATGGATT TCTTCTGCCT 
AATGCAGGAA ACAAAGGTTA TACATGCCAG AAATGTAGCA CTTCTAGAGA 
TGGGGAAGAG TTACAAAAGA TGGCTAGCGA TGTACTACTA TTATCTGACA 
AAGTCTCTTC CTTAGTTTCA TCTGGAATAG ATAACAGTGA GGTAGGTTCT 
ATGTACAAGA CCATTGAAGA GCTAGAGCGG AAGCTTTACC ATCCTTTGTC 
AATCACTTTG CTTCACACAC GGGAAACACT CTTGAAGATA TATATGGAGT 
TACAAGATTG GCAGACTGCA TTGATGTATT GCAGATTGAC AATTCCAGTT 
TATGAAAGAA TTTACCCACC TTTTCACCCA ATGATTGGAT TACAGTTCTA 
TACTTGCGGA AAGCTTGAAT GGTTGCTTGA GTACACAGAG GATGCTCTGA 
TGTCTTTAAC CAGGGCAGCA GATATACTTC GCATAACGCA TGGGACTAAA 
TCCGAGTTCA TGAAGGAACT TTTGGGCAAG CTAGAAGAAG TAAGGGCTGA 
AGCTTCTTTT AGGCTCTCGG CTGGAGATGA ACAATAATTG AGTAACCATT 
TTATTGTGAA GCTCCAGGTC ATCGTGATGG CAAATAGAAT GTAACAATGT 
TGCAACAATG TTCAAATAGG ATAGTACTAA GTAGACAATC TCTAAATTTA 
GAATAGCTTT GTTAATTCAA CATTGGGATA TAAGCTGCCC TGAAGGGCTC 
GCATCGGGAC AAGAACTGTG AACTGGTGAT ATGGAAAATT CATTGTTC

Gene models with high sequence identity

AT2G17900.1 [+] show detail - SET domain group 37
E-value: 6e-139; Score: 158.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Zinc finger, MYND-type	0
HMMPfam	Zinc finger, MYND-type	1e-09
HMMPfam	SET domain	9.7e-14
superfamily	SET domain	2.9e-10
superfamily	SET domain	7.5e-18
ProfileScan	Zinc finger, MYND-type	11.559
ProfileScan	SET domain	10.526
HMMPanther	SET AND MYND DOMAIN CONTAINING	1e-29
HMMPanther	SET AND MYND DOMAIN CONTAINING	1e-29
HMMPanther	SET AND MYND DOMAIN CONTAINING	1.7e-120
HMMPanther	SET AND MYND DOMAIN CONTAINING	1.7e-120

See the detailed result >

AT2G17900.1

Model type: Protein coding
Short Description: SET domain group 37
Curator Summary: Homology Subgroup S-ET - Protein containing an interrupted SET domain.
Computational Description: SET domain group 37 (SDG37); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ATXR2 (TAIR:AT3G21820.1); Has 2797 Blast hits to 2717 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 1313; Fungi - 588; Plants - 382; Viruses - 7; Other Eukaryotes - 507 (source: NCBI BLink).
Link: InterPro Scan - TAIR