K25245

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25245

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25245

Determination of introduced cDNA(s)

  • J023061K06 - Rice Full-length cDNAs - Original: J023061K06

    full reading [+] show sequence

    Nucleotide sequence: J023061K06 - full reading 
    GAATCTCTCT TCTCCCTCTC GGCGCACACC CAGATTCCCG CCGACTCCGG 
    CGCCCCTCTC GCCGCCGCCT GCCCCCTTCC TTCATTCTCT CCTCCTCCTA 
    CGTAAATAAT AATCCACCTA AGACCAACCG ATTATGAGCT CTCTATGCCC 
    GTTTGCCAAA CTCGCCTCTG CTGGCGCCAC ATGCCCCGTA AAATCAGACA 
    ACAAAACCAC CTCATGTCCT GTCACAGCCA ACAATCACAC CGACGACGAC 
    GATAATGAAA AAACTGGCAA TGCTAACACC GATCCTCGTG TGGTGCCAGC 
    AAAGTGCCCC TTTGGCTATG ACTCCAACAA CACCTTCAAG CTTGGCCCAC 
    TCAGCTGCGT GGTCTGCCAC GCTCTGCTAC ATCAAAGCAG CAAATGCACC 
    CCGTGCTCGC ACAAGTTCTG CAAGGCATGC ATATTGCGCT TTAAGGACTG 
    TCCATTGTGT GGTGCTGACA TCCAAGGGAT CGAGCCTGAT GATGAGCTTC 
    AAGGCCTTGT CGACCGCTTC ATTGATGGCC ATGCCCGAAT CAAGAGATCA 
    CATGCTGCAG GCGATGGTGA AGCCGCAAGT GACAAGACCA AGGTCATTTA 
    CGAGCATGTC TCCATGGAGA GAGGAGCTTT TCTGGTCCAG CAAGCGATGA 
    GGGCTTTTCG CGCACAGAAC ATTGAAAGTG CAAAGTCAAG GCTCAGTATG 
    TGTGCAGAAG ACATCAGGGA AGAGTTGAAA TCTAAAGAAG ACAACCAAGA 
    ACTGTGTTCT CAACTTGGAG CTGTGTTAGG AATGCTTGGG GACTGCTGTC 
    GGACCTTGGG AGATGCTCCT TCAGCAATCA CTTACTATGA AGAAAGTGCT 
    GAATTCCTCT CGAAATTGCC CAAAAAGGAT CTGGAGTTGG TCCATACTCT 
    CTCAGTTTCA CTAAATAAAA TTGGAGATCT TTGCTATTAT GATGGGGACC 
    TCCACTCAGC AAGAAGCTAT TATGCGCGTT CGTTGGACGT TCGCAGAAGT 
    GCAGTAAAAG AACACTCAGC TGTGGCTTCC CAGGTCATTG ATGTAGCAAC 
    TTCTCTTGCC AAAGTTGCGG ATGTCGATAG AAATCTTGGG AACGAAAGCA 
    TGGCAGTTGA GGGTTTTGAG GAAGCAATTA AATGCCTTGA GAATTTGAAG 
    CTGGAATCTG GAGAGGCCAG TCTTGAGCAG CGGCGTCTCT CGGTTCTCGA 
    CTTTCTACAA AAACAACTGG ATGACAAGTG ATATGCACGG TTCTTTGAAG 
    AGCACACTCA CAGGATATAT GTACTATCCA TAACGAGGAT CAGCTCCAGT 
    AGTCTCTGTG ATGCATATGG AAGGGAGTTG CTCCAGAATG AATGGTAACT 
    GGTGTGTATT TGAGGTTTGC TGCGACACAG AATAAATACT TTCAAGTTGT 
    ATATGTTTCT TGTGTCTGCC ACGGGCGGAG ACCTCTTTGA GTCAAGATGG 
    CCACCTCTTA AGCCCTGAGG CACCACGGAG ACGAAACTTC TCGGAAGTAC 
    TGGTTCCTTG TTGCCTCTGC CGTGTTATGT GAATGTTATC CCACTGTATA 
    TTTATTGATG ATATAATATA AGAAAAGAAC AGCACAGATG TTTTGTATCG 
    CCCTATC

    Gene models with high sequence identity

    1. AT3G54360.1 [+] show detail - zinc ion binding
      E-value: 4e-122; Score: 435.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 0.0007
    superfamily TPR-like 2.9e-10
    superfamily RING/U-box 1.9e-09
    Gene3D no description 7.3e-05
    ProfileScan Zinc finger, RING-type 11.471

    See the detailed result >

    AT3G54360.1

    Model type
    Protein coding
    Short Description
    zinc ion binding
    Computational Description
    zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 748 Blast hits to 691 proteins in 131 species: Archae - 16; Bacteria - 104; Metazoa - 470; Fungi - 16; Plants - 58; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR