K25314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25314

Determination of introduced cDNA(s)

  • J023125M06 - Rice Full-length cDNAs - Original: J023125M06

    full reading [+] show sequence

    Nucleotide sequence: J023125M06 - full reading 
    GGGCGGCGGC AGCATCTTCT CTTCCCCCCC TCGCAGCCTC GCGTCTCGAC 
    TCCCTTTTCA ACCCTCCTCC CCTCCAGTCT CCTTCCCTCT CTTCTCGTCT 
    CCTCTCCCAC CACCACCGCG CCACCTACCC TCGCCGCAGC GGCAGCCGCG 
    GTTTTAATGA AAAGTAGCAC TTGTTAAAGC TACTAGTTTT GTTAGAAAAT 
    CTAACATGGG GTCAGGAAAC CTGATGATGA AGAAGGTGGT GAGGCCCAGC 
    TCTTTTGATT TCGACATACA GCTTGATAAA AGTTGGACAG AGGATGTTAC 
    TTGCCCAATC TGTCTTGATT ACCCTCACAA TGCTGTCCTG CTAAGATGTA 
    CATCTTATGA GAAAGGTTGC AGGCCATTTG TCTGTGATAC AGATCAAACC 
    CGCTCAAACT GTCTTGAGAG GTTTAAAGGT GCATATGAGC TCCCTGCCAA 
    TATGAAAGTT TCAACCATTG CGGTGGCTCC TCTTGATAGT ATCCATATTG 
    TGGCTCCTAA TGTGAACAAC CGCCCAAGCT GCCCATTGTG TAGAGGAGAT 
    GTCATTGGAT GGATTGTTAT CGGTGAGGCT CGTCTACATC TTAACCAGAA 
    GAAAAGATGC TGTGAAGAGG ATTGTTGTTC ATTCGTTGGC AACTTCAATG 
    AACTTCAGAA GCACACACAA CAAAAGCATC CAGACTCACG CCCTTCGGAA 
    ATTGATCCTG CTAGGCAAGT TGATTGGGAG AACTTCCAGC AATCTTCTGA 
    TATTGTTGAT GTGCTGAGCA CGATTCATGC ACAAGTTCCT AATGGAATTG 
    TTCTGGGAGA TTATGTCATT GAGTATGGGG ATGATGAAAC TGGAGAAGAA 
    TATGAAGTTT TCAGGCGGGT CAGAAGGCAC TGGTGGTCTT TTATGTTTTT 
    CAGGGGATTC TCTAGATCTT CAAGAAGACG AAGAAGAGCA AGGGCAAGGG 
    AAAGAAGAGG CAGTGGAAGG AGGAACAGCA ATCAGGCACA TCTCGAAAGC 
    TTTAACCTCG AGGTTCCCAC ACAATCTGTT GACTTGAGAG AAATCAGATT 
    TGATGAAATT GATGATGAAT ACATAGTCAC AGGGGCCATA CCTAGTATTG 
    CAACACCTGG AAGAATGGCT AGTTTCCATT ACAGGTCTGT AGAAACAGTC 
    TACTGTTAAT CTTCCTTAGT TATTGGAGCT ATATCTATCA TTTTTGTAAG 
    AACAAAGAAC ACATGCTAGT CCAATGAAAA AATATTCAGG TTGTAGAGAA 
    TATGGAATAC AAACATACCG CACTTTTGG

    Gene models with high sequence identity

    1. AT4G31410.2 [+] show detail - Protein of unknown function (DUF1644)
      E-value: 3e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1644 2.4e-65
    PatternScan Zinc finger, C2H2-type 0

    See the detailed result >

    AT4G31410.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1644)
    Computational Description
    Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT3G24740.2); Has 266 Blast hits to 247 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR