K25320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25320

Determination of introduced cDNA(s)

  • J013119F18 - Rice Full-length cDNAs - Original: J013119F18

    full reading [+] show sequence

    Nucleotide sequence: J013119F18 - full reading 
    GTTGAGTGAA ACCAGTACCT TCTCTCAATG TTGATGTGCC TCAGGTGGAG 
    CTGATAGATA ACATTGTCAC AGAGTCTCCT GATTCTTCTG TTGCTGAATT 
    CCCTGATGCA TATCAAAATT CAAGTATGCC TCCTGCTCCT GAGAGCGCAG 
    CTGATTTTCC CAGTTTGTCA AGTGCAGATG CTCCTGACAT TTCAGAGCCA 
    GTATTATCAG GCTATACAGC TAATCCTCAT CCTGAAGTGT CAGCTATTGC 
    TACTAATACC CCTGTGAGCA ATACAGAGGA TGCTCCAGGT CCTTTAGAGA 
    TTTCAGAGTC AGCATCACGA GCCTATATAA TTACACTTCC TAATCAAAGT 
    TTACCTGATT CCAAAGAAAT TCCAGACAGT AAGGCAGAAG ATGCACCCAT 
    AGATTCTCCT GAGAAATTGG AACCAGGACC TTCAAGCTAT ACACCTACAA 
    TTCCCATTAA AGAGTCCTCT ATTGTCAGTC AAAATACTAA TGCAGAAAAT 
    GTTTCCGGAG ACTGTAGTGA AGGCACTGCT TGTGCTATAT CCTATTCCCA 
    GCATATCATT TCTGATAAGC CAACTAATGA GGTATCTGCT ACTAATAGCT 
    CACCTGATGA TACCTCTAGC GATGAAGATA CAGTTGAAAG TGGTGGCATT 
    GTTGAAGTGT CTAATTCACA GCCCATGCCA CTGAATGACT CATTGGAGAA 
    CGGATGTGCA ACTCAAGGCC TCCCAGCAAA TGCCCCTACT AATTCTACTG 
    GAGTATCTTC TGTTAAGCTC TGGACTAATG CTGGGCTCTT TGGACTTGAG 
    CCATCTAAAC CTCCAGTATT CGGTGCCCAT GATGGTCCAA AGGAGGATAC 
    TACACCTGGA CACACACAAC CTCAGCTTTG CCATTCAACT GGGTGCCCCG 
    AAGTTCATTT TTCAAAGCCC ACTGAATCAG CACAAGTATG TGTTCCAAAT 
    GGCAATTCGC CAATTACCAG CAGTTTTGTG GGGAAACTTG TTGGTATCTG 
    TCCTGGTTCT ACAAGCCACA GCTCAGAGAC TAATCAATCA ACAGTAAGAA 
    CACCTGATAC TGTTATTGGT CAAACAGAGG GGTCCACAGG TTGTTCCACA 
    TCTTTTGAGC ACAGTGATCA CAAAAATATT ATTGGTAAGC AAACTTCAAT 
    AAGTGAGCTC CTAGAATCTG AAGACAGTGC TGAAAATGGT GCTGAAATGT 
    TCTCTAAAAC TGACATGACT GGAAGGAATA ACATGAATCA GGTGACTGCA 
    TCAAGCTTTT CAAGCATTGC ACAAAGATTT CTTGCTAATA CACTTCAGCG 
    AAGAACTCCC AAATACACTG ATCTTCCTAT GTCATCTGTT ATAGTTAACA 
    CTGATGCAAA CGGGACTGAT GAATCTACCA AAATATCTTC TCTAGCCCCC 
    AATGAAACAA CATTCGAGGC ATCTCAATTT GAGAAGAAAA CAGAAAATGA 
    CACAAATGGA CTGCCCAAAT CGTCACTCTT CTCTAGTAGC CATTACTCTG 
    AGAAATCATC TCCGCCGCTT GAGTACATGA AAATATCTTT CCACCCTATG 
    AGTGCATTTG AAATGTCAAA ATTGGACCTA GATTTCTCTG ATGAAAATCT 
    TCATGAGAAT GCCGATGATA TGATGTTACC AACGTTTCAG TTACTTCCAG 
    GGTCTTCCGT TCCACAGCTT GGTAGTGGTT CTGAATCGGA AGATGATACT 
    TTTGGCAGAT CTTATAGTTA TTCTTCGTAT GATGATCTAA GTCCACGGTT 
    ATATTCAAAC TCTGAGTTGT GGGATCAAGA AGACGCAAAT GGATTGGAGG 
    ATCATGATAT GCATAACAAT CCAAATCAGA TAGGATCCTT CGGAGCACCA 
    ATCTCTAGCT TTGTGGAATT TGAGCAGATG GACTTATCTG GTGCGAAGTC 
    CACTGTATCA CTTACAGATC TTGGGGATGA TAATGGACTT GGCACGTTAG 
    ATTCTCATCC TGCTGGAGAA CTTCCTAACT TCGATACTTT GATGGCTCAT 
    CAAAATGAGG CCTTCATTCC GCACAATCCA GTAAGTTTAT CACCAGATGA 
    AGGTCAGTTG CCTCCACCTC CTCCTCTTCC CCCAATGCAA TGGAGGACAA 
    TGAGACAAGT AGCTTCTGTA GAAGAAGGAA GAGGTTCTGC AGCTAAAGAA 
    GATATGCTTG AGAGTACCTC AGATCTACCA CCAGTACACA CTCCTGTTCA 
    GGAAGAACAT CTTCTGCCCA TCGCACCACC AGATCAACAA AATCTTCTGC 
    CCATCGCACC ACCAGATCAA CAAGGGCATG CGAAGGAGAA TGACAGAAAA 
    GTTGATGGGG TAAAAGAGAT AAGCAATCCT CTCGACATTG AGATCAGAGC 
    AAGCTTGCTT CAGCAAATCA GGGATAAGTC AGGTCAGCAG AAGCTGAATG 
    GACATGAAAA GTCAAAAGCA GTAGGCAATG ATACTAAAAA CTTGGATGAA 
    AGGGAGGAGT TGCTTCAACA AATCAGGAGC AAGACATTCA ATTTAAGACG 
    AACAAATGCA TCTAAGACAA ACACCTCATC ACCAACCACT GCCAACTCCA 
    GCGTTGTAGC AATCTTGGAA AAGGCAAATG CAATCCGCCA GGCTGTGGCC 
    AGTGATGAGG GAGGTGATGA TGATAGTTGG AGTGATATAT GAATACTCAA 
    CTGGAACGCG TATGAAACTC TTTTTCTGTA TATTCAGCTA GTACAAGATG 
    AAGTGAAAAA ATGTGAATAA CATCCTTTTC TTCATTGTAA TTAGATTTTC 
    CAGGTCTGTT TTGTACCTCT TTTTAGTTCA CATTAGTGTA TTCTCTCATA 
    GGCCCATGCG GTTGTGGAAA TGGTTAGATC ATTTTCACAT TATGTAAATT 
    AACTTTATTA TTTATTTTTG ATAGTGAAAT TAACTGGTAA AATAAGCATG 
    TTAAACTGTT TTTTCTAGCA ATGTATTGAA GTAATATCTC TTTGCATCC

    Gene models with high sequence identity

    1. AT4G18600.1 [+] show detail - SCAR family protein
      E-value: 3e-09; Score: 61.60

     

    InterPro Scan Digest

    See the detailed result >

    AT4G18600.1

    Model type
    Protein coding
    Short Description
    SCAR family protein
    Curator Summary
    Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
    Computational Description
    WAVE5; BEST Arabidopsis thaliana protein match is: SCAR family protein (TAIR:AT1G29170.2); Has 6173 Blast hits to 3634 proteins in 554 species: Archae - 31; Bacteria - 1033; Metazoa - 2349; Fungi - 894; Plants - 343; Viruses - 13; Other Eukaryotes - 1510 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR