K25327

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25327

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25327

Determination of introduced cDNA(s)

  • J033135H03 - Rice Full-length cDNAs - Original: J033135H03

    full reading [+] show sequence

    Nucleotide sequence: J033135H03 - full reading 
    GAGTTGGATG ACTAGCTAGA TAAGAAGGCT TAGTGGGGAT TCCTTTACAT 
    GGCGCGTTAT TAGATGTGCC AAGAGCTATA TTGATCCAGA GACCAGAATT 
    TGAGCCCTGA ATTCAACTAC AAAAAACATT TTGGCTGTTG GAAAAGAAGA 
    TCGTGTTGAT TGGAATTGTA AGTAGTCCTA GCTAGTGCTG CGTCCAGTTT 
    TGTTTCTTGA TACTCTCTCT CTACAAAATC ATAATCCCAT TTTATGTGTG 
    TGCGCTGTGC AAGCCGCAGG AGATCTTGAG TAGATCAGGG ATCAGTGTGT 
    ACGTGAGAAG AGTCGGGCAA GCAGCAATGG AGCATGTGGT GGGTGCTTCG 
    GAGGCCACCA TGAGGTCTCT GCTGACCAAG CTCGGGGGCT TACTCTCCCA 
    AGAGTACGCT CTCATCCGTG GCGTCCGGGG AGACATCCAG TACATCCGCG 
    ACGAGCTGAC GAGCATGCAG GCGTTCATCC GCGACCTGAG CGGCACGCCG 
    GAGGGCAAAG GCGACGAGCA CGACCACCGG ATGAAGGACT GGATGAAGCA 
    GATCCGCGAC GTCACCTACG ACATCGAGGA CTGCATCGAC GACTTCGCGC 
    ACCGCCTCTC CCACGACCCC GGCGGCGACT ACCTGTGCGG CTTCGTCGTG 
    TCCAGGGTGT ACGAGATCCT CACATGGTGG CCTCGCCGCG ACATCGCCTC 
    CAACATCGCG GAGCTCAAGA TGCTGGCGCA GCAGATCGGC GAGCGGCGCA 
    CGAGGTACGG CGTCGAGAAC CCCCAAAAAG ATCGGGAGAT GAGAACAAAT 
    CCGGTCCAGC CACCATTGGA TTTGATGCCG CCGAGAACCA GCACACAAAC 
    CTTGAGAGCT GGTGGGAGTG GAGGCCTACA TGAAGGAGCT GACGAAATGG 
    GTGACGAACG AGACATACCA AGACGGCGTG CTGTCCGTCC TCGGTTTCGG 
    AGGGGTGGGG AAGACAACCA TCGCCACGGC ACTGTACCGG CAACTCGGCG 
    ATCAATTTGA CCGGGGCGAT GGTCACGGTG TCCCAGAGCT CCGACGTTGA 
    GGCCATCTTG AGAAGCATAC TTGAACAAGT CATGCCGCAG TCCAAGGATG 
    GTCAGGAGCT GCAGGGTGGC CACGCCTCCC AGAAGAAGCT TCTACATCAG 
    GCAGTCATCA GCTACTTGCA TCCTCTCATG CCCAAGGCCC TCCGACGCCG 
    AAGCAGCTCC AACTCCAACT CCGACAACTC CAAGATTAGA GAGGGGAAGC 
    TAACGCGTCT CCCGAGAGCT CTCACCCTGG ATCGCCAGTA TGACCACGAT 
    CCGCAGGACG GCAACGATGC TGCCGCCGGC TCATCTGAGA CAGTAGTAAC 
    AACCCCTGCA ACGAAAGGCA CGGCCACCTC CGATGAAAAG CCTACTAGTG 
    TCATTGCTAC CATACGGGGT GCCTTCAGGC CCTGGGATCG CCGTCGCCAC 
    CCACCGCAGG ATGACAAAGG TGGTAGCACC TCAGGCTCAG GGAAGGAGGC 
    TATTAACATT CAAACAATGA ACAAGCCCGG CGAAAAAAAC ATTCAAACCA 
    TGAAGCGTGA CGGTCTCTCA AAATTGCTGC AGGAGCACCT AAATCAAAAA 
    AGGTATTTCC TATTAATTGA CGATGTGTGG TCTGCCACAA CTTGGGAGCA 
    GATCAGAAAG CACTTGCCTA CAGATAACCT AAGCTACAGA ATAATAGTTA 
    CCACAAGGTT TCAAGCTGTT GCTACCGCAT GTAAAAGGAA AGAAAGTGAC 
    CGCATTCACA AAGTGGATGT TCTTCGCGGA AAAAAACCCG AAAAACTCTT 
    CAATGAAGTC GAGTCCGAAT CCAGAATCAG CAAAGATGGT GAACGGAAAG 
    AGATAGATGA TGGTGAACAG AAAGAGAGAG AAGGTCAACA GAAAGAGATA 
    GATGGTGAAC AGAAAGATAT AGTGCGTCCC CGCAGGATCT GGGAAATGTG 
    CAGCGGGCTT CCATTGGCCA TTGTCACCAT GGCTGGTCAC GTGGCCTGCA 
    ACTCAGACAA AGATGAGACA CATTGGCTTA ATGTCTGTAA ATCTCTAGTT 
    CCAGAGTCGG GAAGAGATAT GACACAGGAG GGTGTAACCA GAATACTTGG 
    TCATTGCTAC AATGATATGC CTGCCGAGCT GAGGACTTGC TCTCTGTACC 
    TGAGTATATT CCCGAAAGGC AACAAGATTA GCAGGAAGCG GCTGACAAGG 
    CGATGGATAG CTGAAGGCTT TGTCAGTGAG AAGCAGGGGC AGAGTGTGGA 
    GGATGTTGCG GAGGCATGCT TCTGTTGGAA ATATAGTCAT TAATCGGCAT 
    ATTTTAATCC AAAAGGTTAA AGC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 8e-20; Score: 96.30

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 5.2e-07
    HMMPfam NB-ARC 3.2e-06
    HMMPfam NB-ARC 1.1e-33

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR