K25512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K25512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25512

Determination of introduced cDNA(s)

  • J023023F15 - Rice Full-length cDNAs - Original: J023023F15

    full reading [+] show sequence

    Nucleotide sequence: J023023F15 - full reading 
    ATCTTCCCCG TTCCTTCCCT TGGCGTAAGA GAACGAGAAA TCTCCCATCT 
    CTCAGTCGTC TCCCCCGCTT CCTTGCGCCA AGACGAGTCG CGGCTGAGCA 
    GGAGAGGGGC GCCGATCTCC ATCCGGCGAG CAGAGCAGGG GAGGGGATCC 
    TGGTATAGAT TGTTGATTGC TTGTGCGTGA ACACAACTAA AGCAGTAATT 
    CTTACCGTGT CAGCGTGATC TGGGACTGTG GCCAATTGTA CCATAAGTGG 
    AAACACAGCT GCGAAGATTG TCGGTGGTCT TCGCTGATAA TATATTGGGC 
    AGGCTAAGTT TCAAGTTCAG TTTGCTGAAT TCAGCGAGCC TAGATGTCGT 
    TTCGCAGCAT TGTTCGTGAT GTTAGGGATA GTTTTGGTAG CCTGTCGAGG 
    CGAAGCTTTG AGGTCACCCT GGCTGGTCTA TCGGGGCTTA CCGGCCACCA 
    TAGAGGCAAG TCTCAGAGTA CGGTTCACGA GCTCTGTGAT GCAGATCTCA 
    TAATCCAGGA GAGTCGTTGG GCTAGCCTCC ATCCTGAGCT CCTACGCGAT 
    GTGATCCGGA GGCTGGAGGC TAGTGAGAGC ACCTGGCCGT CACGCAAGGA 
    TGTCGTGTCC TGTGCTGCCG TCTGTAAGGC ATGGAGGGAG ATGTGTAAAG 
    AGATTGTGCT GAGCCCGGAG TTTTGCGGGA AGCTTACCTT CCCGCTCTCT 
    CTAAAGCAGC CTGGCCCTCG AGATGGAATG ATTCAATGTT TCATAAAGCG 
    GGATAAATCT AAATCAACTT ATCATCTCTA CTTGTGCCTG AGTACTGCTG 
    TACTTGCGGA TAGTGGCAAG TTCCTCTTGT CCGCTAAAAG GCACCGCAAA 
    ACAACCTGCA CAGAATATGT TATCTCAATG GATGCAGACA ACATTTCAAG 
    ATCAAGCAGC ACCTATATTG GAAAACTAAG GTCAAACTTC CTTGGCACAA 
    AATTTATAAT CTATGACACA CAGCCCTCTT ATAATGGGGC TGTAATCCCT 
    CCTGTTGGAC GGAGCAGCCG AAGATTCAAC TCCAAGAAAG TGTCTCCTAA 
    GATGCCGTCT GGTAGTTATA ACATAGCTCA GGTGACATAT GAGCTTAATG 
    TTCTTGGCAC CAGGGGCCCT AGGCGGATGC ACTGTGTCAT GCACTCCATA 
    CCTGCCTCCT CAGTCGAGCC TGGTGGCATT GTCCCTGGCC AGCCCGAGCA 
    GATTGTTCCC CGAGCTTTCG AGGAGTCATT TCGCAGCACC ACCTCCTTTT 
    CTAAGTCATC CATCATGGAT CGGTCCATGG ATTTCAGTAG TTCCCGTGAT 
    TTCAGCAGTG CTCGCTTTTC AGACATTGCT GGAGGCACCA TAAATGGTGA 
    TGAAGAGGGG CAAAATAAGG AGAGGCCACT AGTGCTTCGC AACAAGGCCC 
    CTAGGTGGCA TGAGCAGCTC CAATGCTGGT GCCTTAATTT CCGTGGGCGT 
    GTAACCATTG CGTCGGTAAA GAATTTCCAG TTGATTGCTG CACCAGCACA 
    GCCTCCCGCA GGGGCTCCAA CTCCGTCACA ACCTGCTCCA CCAGAGCAGG 
    ACAAGATTAT TCTACAGTTT GGTAAGGTAG CAAAAGATAT GTTCACAATG 
    GATTACCGCT ATCCGCTCTC AGCTTTCCAG GCATTTGCAA TATGTTTAAG 
    TAGCTTCGAC ACAAAACTGG CCTGCGAATG AGGGAAACAG TGAGCTCTAA 
    TGGAGGCAGA ACTGGAAATG CAACAGAGAG CAACTTGAGA AATGTAATGC 
    CCAAGGGCTC TAGATCATGT TTGCATTTTG TTGTGTCGTC TTGGCTGTAT 
    TTCTGCTTGT AGCCTGGAAC TGGATTTCTC AGCCTGTATG TTTCACCTGG 
    TAGCACCATG ATAGGTTTCC TTTGGGACAG CGGTTCATGC ATTGCATTTT 
    TCCATTTGTG TGGTGTACAT GCGGTTCCGG ATTTAAGCTG AAAGGATCCG 
    TTCATGTCTT TGTTAAGCTT TGCATGGATG CCGTGTTCTG GTAAAGAAAA 
    GGGAAAGATT CAGTGCTTCA CCT

    Gene models with high sequence identity

    1. AT1G25280.1 [+] show detail - tubby like protein 10
      E-value: 1e-151; Score: 534.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TUBBY-LIKE PROTEIN 2 4.9e-186
    HMMPanther TUBBY-RELATED 4.9e-186
    HMMPfam Tubby, C-terminal 1.9e-115
    HMMPfam F-box domain, cyclin-like 1.1e-06
    PatternScan Tubby, C-terminal, conserved site 0
    PatternScan Tubby, C-terminal, conserved site 0
    Gene3D Tubby, C-terminal 1.3e-103
    FPrintScan Tubby, C-terminal 1.5e-79
    FPrintScan Tubby, C-terminal 1.5e-79
    FPrintScan Tubby, C-terminal 1.5e-79
    FPrintScan Tubby, C-terminal 1.5e-79
    FPrintScan Tubby, C-terminal 1.5e-79
    FPrintScan Tubby, C-terminal 1.5e-79
    FPrintScan Tubby, C-terminal 1.5e-79
    superfamily Tubby, C-terminal 1.1e-109

    See the detailed result >

    AT1G25280.1

    Model type
    Protein coding
    Short Description
    tubby like protein 10
    Curator Summary
    Member of TLP family
    Computational Description
    tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 961 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 21; Plants - 475; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR