K25938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25938

Determination of introduced cDNA(s)

J013103C07 - Rice Full-length cDNAs - Original: J013103C07

full reading [+] show sequence

GAGCCCCTCC TTTCCTTCCA TCGCTGCACC ACCGCCGCCA CCGCCAGGTT 
CGCGTCGCCG ACGTGCCCTA CGCCGCTGCT GTTCGTCGCC CGGTCTCTAG 
TTTGGCTGAC TTCTCGCCGC AGCCGGTCAC ATCACGCGTC CTTATCACAC 
GCTGCTCTTC AATCTCCTCC TCCCGCCGCC GCCGCCGCCG CCGTCATCCG 
CCTCCCCAGA AGCTGCATCT CTAGTCCGGA GGACGCAATT TGGAGCAATT 
CAAGAAGTCC TGATAGGAAA AAGGACTCCC ATTATCTTAA CGATTTTCTA 
TAGGAGGGCG CAATTTGGAG CAATTCAAGA AGTCCTGATA GGAAAAGGAA 
GGGAATAAAA AGAGTCCAGG TTCCTCTTGC TCGTACCAGG GCCATCGCAA 
TCCTTTTTAT GCCTAGTCGA ATTTTCCGAA ATTGAGGTCA AAATTCAAGT 
ACAAAAACAG ATAGTAGTAG ATAGGAGAGA AATAGTGATC TGAAGGAGGG 
GAAACGGAAG TGATTTCTCG GTGAGATCTG ACGAAGAAGA GTCGTCGTCG 
ACCTACTAGT TCCACATGCC TGCGAAACGC AACCAGAAGC GGCGCCGCCG 
CCAAATCAGA GCCCAGAATG AACTGATTAG GTGGTGTAAA AGAAAGGGAT 
CACCTTGTCA GCATGGTGAT TCTCGAGCTG TCAAAACAAT GAGACGTTCT 
ACCCCATACC CATGCCTTCC TGAGGACATC TGGCATCATA TACATTCCCT 
AATGCCAATG CGTGATGCTG CCCGTGCTGC TTGTTTGTCT AGAACCTTTT 
TACAGTCCTG GAGAAGTCAT CCCAATCTCA TTTTAAATAA GGATACAATT 
GGCTTGAATG CGAGTGCTTG TGGAGGGAAT TTCAGCCGCA AAGTTGACCA 
TATTATGAGG AACCACTCAG GCATTGGCGT GAAAATATTC AGGCTTGAAT 
ACCTTGGCGT CGTGGGGTTT GATGCCAGTC GCTATCTTGA CAGTTGGCTT 
CAGGTGGTTG TTAAGCCAGG GATTGAAGAG CTGACCCTTG TGTTGTGTAA 
AACCAAGAGA GAGTACAATT TCCCATGCTC ACTTTTATCT GATGGGATTC 
AAAATTCAAT TAGGTACCTC AGACTCGATT GGTGTGCCCT TCGTCCCACT 
GCTGAACTCG GCCCCTTGCA AAGCCTTACA AGCCTGCGTC TGCGTTCGGT 
GAGTATCAGG GGGGAAGAAT TGCAGTGTCT TCTTTCCAAT TCTCCTGCGT 
TGGAGCAGTT GCGCATTTCT AGTTGCACGG AGATAGTTTG CTTGAAGATA 
CCTTGCTCCC TGCAGAAGCT CAGCAACCTT ACTGTTATTG GATGTGACAG 
CCTGAAAGTA TTAGAGAACA AAGCTCCAAA TCTCTCCAGT TTTTTTGTTT 
CTGGATGCTC TAACCTGAGA ATATTAGAGA ATAAAACTCC AAATCTCTCC 
AGTTTTTTCT GTAGAGGAGT CGGGGCAAAG CTCTCACTTG GAGAAACACT 
GAAAATGAAG AAGCTAGGCA TGGGCCGTGC GAATGCTGTG CATTATGCTC 
GTGCTGAGCT GCCTTCCATT ATGCCAAATC TTGAAACTCT TAACATACGT 
TCAGGACCTG AGGTATGTAT ATATATATCC AGAAGCTTTA GGTGTTATAG 
ACTAGTATTA CATATATATG CGTATTACAT TAGTCATACC TGTGTATGAT 
TTTAGACGTG TCATATTTGT TATACAGGCG GTAAATACAC CAGTGCTGCC 
TACCAAATTC CTCTACCTCA AGCACCTGAG CATTAGTTTG ATAGCAGTAT 
CGACACTTTC CCCGTCCTAT GATTATTTTT CTCTGGTTTC TTTCCTTGAC 
GCTTCTCCTT CGTTGGAAAC TTTTATCTTG GATGTAAGGC ACTGTCCATT 
AACTCTGTCC TGCTAACATA GCTGTTCACT CTGGGTCCAT TTATCTCAAT 
CGTGTTCTCC TTTCCATCTT CAGGTGCAGC AGCGAAGCAT GGAGCATGAA 
TCGGTTTTTG CAAAATCCTC GGGTTTGAGG CAAATTCCTG AAAACCGCCA 
TGACAGCCTC AAGACTGTGA AGATCTCTGG TTTCTGCTCT GCAAAGAGCT 
TGGTTGAGCT AACTTGTTAT ATTCTGAAGA ACGTGGTGTC ACTCGAGTCT 
CTTACATTGG ACACCATTCA TGGTGATTGT AGGTGTTACC TAAAAACTTC 
TCCATTTTGT AATCACATAG AGGAGGATAT TCTCATGG

Gene models with high sequence identity

AT4G03220.1 [+] show detail - Protein with RNI-like/FBD-like domains
E-value: 1e-07; Score: 55.80

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	2e-05
HMMPfam	FBD	6.7e-05
superfamily	RNI-like	6.9e-10
superfamily	F-box domain, Skp2-like	6.9e-06

See the detailed result >

AT4G03220.1

Model type: Protein coding
Short Description: Protein with RNI-like/FBD-like domains
Computational Description: Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 1478 Blast hits to 1464 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR