K26002

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26002

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26002

Determination of introduced cDNA(s)

  • J023075I02 - Rice Full-length cDNAs - Original: J023075I02

    full reading [+] show sequence

    Nucleotide sequence: J023075I02 - full reading 
    GTTAGATAAC CCTAGCCTCC CCCTTCCTCT TCCTCTCCTC CTTCTCTCGA 
    TCTCTATAAA AGACCTCGGA TTTCGAATTC CTCCGCCCCG CGCGCGCGCG 
    CCACCTCCCC CACGCCCGTC GCGCCCTTTT TTTTGGGGGT GGGATTCGCC 
    TGGTCAAGTG CCATCGTCGG ATCATGGCGG CGGAGGCGGC AGCGGCGCTG 
    GAGGGGAGCG AGCCCGTGGA CCTGGCCAAG CACCCCTCCG GCATCATCCC 
    CACGCTCCAA AACATCGTAT CGACGGTCAA TTTGGATTGC AAATTAGACC 
    TCAAAGCTAT AGCTTTGCAA GCTCGCAATG CAGAATATAA TCCAAAGCGT 
    TTTGCTGCGG TTATCATGAG AATAAGAGAA CCAAAAACTA CAGCTCTGAT 
    ATTTGCATCG GGTAAAATGG TCTGTACTGG GGCAAAGAGT GAACAACAAT 
    CCAAGCTTGC AGCAAGAAAG TACGCTCGTA TTATCCAGAA GCTTGGCTTT 
    CCTGCTAAAT TCAAGGATTT CAAGATTCAG AACATTGTTG GCTCTTGTGA 
    TGTTAAATTT CCAATCAGGC TGGAGGGACT TGCATATTCT CATGGTGTTT 
    TCTCAAGTTA TGAGCCAGAA CTCTTTCCTG GTCTGATATA TCGGATGAAG 
    CAACCAAAGA TTGTTCTTCT GATTTTTGTT TCAGGCAAGA TTGTTTTGAC 
    CGGAGCAAAG GTGAGGGATG AGACGTATAC CGCCTTTGAG AACATATACC 
    CTGTGCTAAC GGAGTTCAGA AAAGTCCAGC AGTGAAAACT TATGGAATAC 
    ACAAGTACAA GCTTCCTTGA GATTTTGCTG CCTAGTGACT GCTAATCTTA 
    ACTGTACATA TGGTCTGGAG GAGCGTATAG CATCTTGTAA TTTATGTGAG 
    CCCCTCGATG CACGAGTGTT GTAGACTTGT TGTAGTAGGC TTGTAGCTTG 
    GGTGACTGAG AGACTTGAGT ATCGCGTTCA GTCGAACGAG GTGGAGACGT 
    GGAGTTATCG TACTTTAGCC CGTGCTGATT TTTTTCCCTT CACAAATAGA 
    TCTGTAGCGA AACATTTTAT TACAGAAATG GGCGGCTAAC TTTTAACAAA 
    CAGAACATAT GTACTGTGGA TGCGTTGCGT TTTACAGTAG AATGTCATGG 
    ACTGTTTGGA TGGTGG

    Gene models with high sequence identity

    1. AT1G55520.2 [+] show detail - TATA binding protein 2
      E-value: 3e-100; Score: 362.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal 8.7e-33
    superfamily Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal 1.8e-32
    PatternScan TATA-box binding 0
    PatternScan TATA-box binding 0
    FPrintScan TATA-box binding 2.8e-68
    FPrintScan TATA-box binding 2.8e-68
    FPrintScan TATA-box binding 2.8e-68
    FPrintScan TATA-box binding 2.8e-68
    FPrintScan TATA-box binding 2.8e-68
    FPrintScan TATA-box binding 2.8e-68
    HMMPanther TATA-box binding 1.7e-136
    HAMAP TBP_MF_00408 27.9
    HMMPfam TATA-box binding 1.1e-32
    HMMPfam TATA-box binding 5.5e-35
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 5.9e-25
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 3.4e-32

    See the detailed result >

    AT1G55520.2

    Model type
    Protein coding
    Short Description
    TATA binding protein 2
    Curator Summary
    TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
    Computational Description
    TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR