K26016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26016

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26016

Determination of introduced cDNA(s)

  • J033037B09 - Rice Full-length cDNAs - Original: J033037B09

    full reading [+] show sequence

    Nucleotide sequence: J033037B09 - full reading 
    GTGTGCCAAA ACCGCCCACC TCCTCTCGCC CCTTCTCGCC GCCTCCGCCG 
    CCGCCGCCGC CGACGAGGAG GAGGCCGATG GGCTCCGAGG AGGAGCCGTC 
    GCAGATGCGG AGGGCGCTGG TGGACGCGCT CGCGGGGGCC ATCTCCGGCG 
    GCATCTCCCG CACCGTCACC TCCCCCCTCG ACGTCATCAA AATCCGCTTC 
    CAGGTTCAAT TGGAGCCCAC AACCTCGTGG GGTGTACTTC GAAGGGATGT 
    CTATGGACCT TCCAAGTACT CTGGGCTTTT GCAAGCAAGT AAAGATATTC 
    TCCGAGAGGA AGGTTTGCCG GGATTTTGGA GAGGAAATGT TCCAGCCCTA 
    TTAATGTATA TGCCATATAC AGCTATACAA TTCACTGTTC TACACAAGCT 
    GAAAACATTT GCTTCTGGTT CATCCAAAAC AGAGGATCAT TTGCACTTGA 
    GTCCTTACCT ATCGTATGTA AGTGGGGCTA TAGCAGGATG TGCAGCAACA 
    GTAGGATCAT ATCCATTTGA CCTTCTCAGA ACAATTCTTG CATCACAGGG 
    TGAACCGAAG GTTTACCCTG ACATGAGGTC TGCATTTCTT GATATAATGA 
    AAACCCGCGG TTTCCGAGGA CTTTACGCCG GTCTAACTCC AACTCTTGTT 
    GAAATCATAC CATATGCTGG CTTACAGTTT GGTTCATATG ATACTTTCAA 
    ACGGTCGATG ATGACATGGA ATAGGTACCG ATATTCACAT CTTAACTCAG 
    GAAGTGAGGA TGATTCAGTA TCAAGCTTCC AGTTATTTCT TTGTGGATTT 
    GCAGCCGGAA CATTTTCAAA AGCTGCTTGT CACCCACTTG ATGTTGTAAA 
    GAAAAGATTT CAGATTGAAG GATTAAAACG ACATCCAAGA TATGGCGCCC 
    GAATTGAGAG CAGCACATAC AAGGGCATGT ACCATGCCCT AAAAGAGATT 
    GTTGCGAAGG AGGGGTTTGG AGGCCTTTAT AAAGGACTTT TCCCATCTTT 
    GGTGAAATCG GCTCCTGCTG GTGCCGTGAC ATTTGTGGCA TATGAATACA 
    TCTCAGACTG GATAGGGAGC AAAGCTGGAG TCGAGTGAGT TCTTGGATGA 
    AGGAGCCATT GAGAGATACA ACATACAATG ATGAGAGAAC AGTGTCCACT 
    CTTAATTGTT TTGTGACCGC AAGGTCGAAA GTTAAAAAGT GCATACAATC 
    CCTTGAGAGC TGATACTTGG AAAGCCTTGC ATAGAATTAG CTACTCTTGT 
    CATTTCTCTG CCTTTTTGCC CCATTGACCT GTGTTGTTGC ATTCGTTGAG 
    ATGTAACAGT GAGGATGAGT AAAACTAAGG AAAGTGTAGA GCTTGTGACG 
    CTTGATGAAG GCCGGGGAGC GGCAGGCATT TTTGTTAAGA TGATATTATC 
    TCACTCCTAT ATGTCCCTCA CTCACATAAT GCAGTTAATG TGAACTGTTA 
    CATGATTCGT AGCG

    Gene models with high sequence identity

    1. AT5G48970.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 2e-143; Score: 506.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    FPrintScan Mitochondrial carrier protein 3e-22
    ProfileScan Mitochondrial substrate/solute carrier 28.477
    ProfileScan Mitochondrial substrate/solute carrier 22.835
    ProfileScan Mitochondrial substrate/solute carrier 25.066
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 2.1e-112
    HMMPanther Mitochondrial substrate carrier 2.1e-112
    HMMPfam Mitochondrial substrate/solute carrier 6.7e-24
    HMMPfam Mitochondrial substrate/solute carrier 2.1e-21
    HMMPfam Mitochondrial substrate/solute carrier 1.3e-24
    superfamily Mitochondrial substrate carrier 2e-85

    See the detailed result >

    AT5G48970.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Computational Description
    Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT3G21390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023085E21 - Rice Full-length cDNAs - Original: J023085E21

    full reading [+] show sequence

    Nucleotide sequence: J023085E21 - full reading 
    GCCTCCCCTC CCCGCCCGCG TGGCCTACCC CCTTCGTTAG GGTTTCGCGC 
    CCTCTTCCCT CTCTCCCTTC CCCTCGGCCG TCGGCCCGGC TCCTCGCGGC 
    GGCGGCGGCG GCGGCTCGCT TTCTAGGGTT AGGGTTAGGG TTCCGGCGGC 
    GGAGGAGGAG GAGATGGGTG TGCCGGCGTT CTACCGGTGG CTGGCGGAGA 
    AGTACCCGAT GGTGGTGGTG GACGTGGTGG AGGAGGAGGC GGTGGAGATC 
    GAGGGCGTCA AGGTGCCCGT CGACACCTCC AAGCCCAACC CCAACGGCCT 
    CGAGTTCGAC AACCTCTACC TCGACATGAA CGGGATCATT CACCCCTGCT 
    TCCACCCCGA GGATAGGCCC TCTCCGACAA CATTCGCTGA GGTTTTCCAG 
    TGCATGTTTG ATTATATCGA TAGGCTATTT GTCATGGTTC GCCCTCGGAA 
    GCTTATGTAT ATGGCCATTG ATGGTGTTGC TCCTCGTGCC AAGATGAACC 
    AGCAACGCTC TAGACGATTC AGAGCTGCAA AAGATGCTGC TGATGCGGCC 
    GCAGAAGAAG AGAGGTTGCG TGAAGAGTTT GAGAGGGAAG GCAGAAAACT 
    TCCACCAAAA CAGCAATCTC AAACATGTGA TTCTAACGTT ATTACTCCAG 
    GAACAGAGTT TATGGCTGTT TTATCGATTG CTTTGCAGTA CTACATCCAT 
    CTCAGGTTGA ATTATGATCC TGGATGGAAA CAAGTTAAAG TTATTCTTTC 
    TGATGCCAAT GTTCCTGGTG AAGGGGAACA TAAAATTATG TCCTACATTC 
    GCGGTCAACG GAATCTCCCT GGATTTAACC CAAATACTCG CCATTGTTTG 
    TATGGCCTGG ATGCAGACCT GATCATGTTA GCTCTTGCAA CACACGAAGT 
    ACATTTCTCT ATACTGAGAG AGGTAGTTTA TACACCTGGA CAGCAGGACA 
    AATGCTTCTT GTGTGGTCAG GTTGGACATC TAGCAGCAAA CTGTGAAGGA 
    AAGGTTAAGA GAAAAGCTGG GGAGTTTGAT GAAAAAGGTG AAGCTATTGT 
    TCCAAAGAAA CCTTACCAGT TCTTGAATAT ATGGACCCTC CGGGAGTACT 
    TAGAATATGA GTTCAGAATG CAGAATCCAC CTTTCCCGAT TGACTTTGAA 
    CGCATCGTTG ATGATTTCAT CTTCATGTGT TTTTTTGTTG GCAATGATTT 
    TCTTCCACAT ATGCCAACAT TAGAGATTCG TGAGGGAGCT ATTAACTTGC 
    TAATGGCTGT ATACAAGAAG GAATTTCCTT CCATGGGTGG CTATCTAACT 
    GATGCTTGCA CGCCGGATCT GAATAAAGTT GAACACTTTA TTCAAGCAGT 
    TGGCTCCTAC GAGGATAAAA TATTTCAGAA AAGAGCTCGT TTGCATCAGC 
    GTCAAGCTGA AAGGATAAAA CGAGAAAAGG CCCAAGCAAA ACGAGGGGAT 
    GACCTGGATC CCCATGTCAG GGATGATCTT ATTGTACCTG TTGCACGCTT 
    CCAAGGGTCT CGCCTTGCAT CTGGACCTGT GCCTTCACCA TATGAACAAA 
    ATGGATCTGA CAAAAACAAT GGGGGAAAAA ATAGTCGTGC TCGGAAAGCT 
    GCACGGGTAT CATCGTCAGG TTCAAGCATT GCGGCTGCTA TTGTTGAAGC 
    TGAAAATGAC CTTGAAGCAC AGGAACGCGA AAACAAGGAA GATTTGAAGA 
    CAATGCTTAA AGATGCACTT CGTGAGAAAT CTGATGTTTT TAATTCTGAA 
    AATCCAGAGG AGGACAAGAT AAAACTTGGA GAACCAGGAT GGAGGGAAAG 
    GTACTATGAA GAGAAGTTTG GAGCAAGAAC ACCCGGGCAG ATTGAAGAAA 
    TACGCAGAGA TGTCGTTCTG AAATATACTG AAGGTTTGTG TTGGGTAATG 
    CACTACTATT ATGAAGGTGT CTGCTCGTGG CAATGGTTTT ACCCTTACCA 
    TTATGCTCCT TTTGCTTCGG ATTTGAGTGG TCTAGGTCAA CTCAATATAA 
    CTTTTGAACT TGGGTCACCA TTCAAACCGT TTGATCAACT TATGGGAGTT 
    TTCCCAGCTG CTAGCTCCCA TGCACTCCCT GTACAGTATC GGCAATTGAT 
    GACAGATGCA AATTCACCAA TAATTGATTT TTATCCAACT GATTTTGAAG 
    TAGATATGAA TGGGAAGAGG TATTCATGGC AGGGGATAGC AAAACTGCCC 
    TTCATTGATG AAGCCCGGTT GCTAGCTGAA ATTAAAAAAG TTGAGCATAC 
    TTTGACGCCT GAAGAAGCAA GGAGAAACAG TATCATGTTC AATATGCTTT 
    TTGTGAATGG CTCCCATCCA CTTTCGCCTT ATATCTACTC CCTCAACAGC 
    AAATTTGGAC ACCTACCTGA CAGAGAGCGA AATGAAATTA AAGAAAAGAT 
    TGATCCTTCT TCTAGTGGAG GAATGAATGG TTACATCTCA CTTTGTAGTG 
    GGGATCCGTG CCCTCCTGTC TTCAGGTCTC CTGTTGATGG GTTGGAGGAT 
    ATCATGGACA ATCAAGTGAT ATGTACAATC TACAAGCTTC CGGATTCTCA 
    TAAGCACATC GCTCGTCCAC CTGTTGGTGT AATCATACCC AAGAAGACTG 
    TTGAAGCTAC TGACCTGAAA CCACCACCTG TGCTATGGCA TGAAGACAGT 
    GGTAGGAGGC CTCATGATAA TAACAACAGG AGGCCTTATG AAAACAGCAA 
    CAGGCAAAAC CCAGCTGGAG CAATATCTGG CCGCCAACTT GGGGAAGCTG 
    CCCACCGACT TGTGGTGAAC AGCTTGAATG CTCGGAGTGG CGGACAATAC 
    AATACCCCAT CGATGCCATA TCAAACCATA ATGAATGGCA TGCCTTATCC 
    AAATGGGATT CCACCAAGGA TGGAGCAGCC TGCTCCTGGC TGGCATGTTC 
    CTGGTGATCT ACCAAATGGT CAGGTACCAC CAGCTTATGC ATCATCATCA 
    GGTCATTATC AGAACGATAG GTCTGGGCCT TCTCAGTATG GACGAGATAA 
    CCATGGAAGG TACCCATATG CAAGAGACAA CCACCATGAT TCAAGAGGAA 
    GGGTTCCACC ATACCATCAG AGCGGTGGAA ACTCGTATCA ATCACATTCT 
    GCTCCATCAG CAGGTCCTGG ACGGTATGCG CAACCCCCAC CATATGCTGG 
    GGGGTATGGT AGGAGCTACC AGCCTGCACC GTATGGAGGT GGTCAGCAGT 
    GGCAGCAGCA GCAGCAACAA CCTTATGGCT CCTATGCTGG GTCAGGGCCT 
    TATGGGGGTG GGGCACCTCC TGCAAGGCCT AATTCACGAC CACAGCAGTC 
    GCAGAACCGT TACAATACCT TAGATAGGAA TTCTAACAGG AGACCTCCAC 
    CAGGTCATGG GCGACACTAA GCCCAACCTC TGTTTGTTGT ACCTGTGGTT 
    TTGTTGTTAG AAAACCTGCG TACTAAAATA GAGAACCTCA GCCTAGTAAA 
    ACAGAGAACC TCAGCTTAGA GATATATATA GAGCAATTTG CATAGTCTCG 
    TGATCGACAA GCTGTTATAG CATCAAAGGT TCTAAGAGGC ATGTGTTGTA 
    CAATAGAATT GTCAGTTCAT CAGATACTGG TGGCTGACTG CCGTTTTTCA 
    TTTGTGGCAC TCATTATTTT AGCCCCCTAA GGTTGGGAAT ATGTTTAACA 
    AGTTTTGTAT TTTTAAGATA ATAATGTTCT AGGTTAAATT TCAGTTTTGG 
    TGGATATATG TCAAAATCTT GTATTCTTTT CTTATTTATA ATGGAATTGT 
    GGTTTTCCCT CT

    Gene models with high sequence identity

    1. AT1G75660.1 [+] show detail - 5'-3' exoribonuclease 3
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR 5'-3' exoribonuclease 2 0
    HMMPanther 5'->3' EXORIBONUCLEASE 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMSmart Zinc finger, CCHC-type 0.0059
    HMMPfam Putative 5-3 exonuclease 1e-107
    HMMPfam Zinc finger, CCHC-type 0.0005
    ProfileScan Zinc finger, CCHC-type 9.521

    See the detailed result >

    AT1G75660.1

    Model type
    Protein coding
    Short Description
    5'-3' exoribonuclease 3
    Curator Summary
    Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
    Computational Description
    5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR