K26221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26221

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26221

Determination of introduced cDNA(s)

  • J033075C14 - Rice Full-length cDNAs - Original: J033075C14

    full reading [+] show sequence

    Nucleotide sequence: J033075C14 - full reading 
    GGCAGTCACG CGCACTCTCA CTCACACGGA GAGAGAGAGA GAGAGAGACT 
    AGACTAGTAG TACCAATTAA TGGCGGCGCT CTCCTCCTGC TTACTCGCCG 
    CCGTCCGACC TCATCCTCCA CCTCCACCTC GACCGCTCTC CCCTTCCTTC 
    ATCCCCTCTG CCCTCCGCCA CCGCCACCGC CTCAGCCAAG CGCCGCCCCT 
    CGCCACCTCT CTCCCACGAC CACGACCACC ATGGTGCCGC TTCTCCGCCT 
    CCTCGCCGCC ACCGCCACCC GACGACCCTG ACGACTACGA GCTGTTGGAC 
    ACGACAGGAA ATTGTGATCC TTTATGCTCC GTTGATGAAG TTAGCTCACA 
    GTATTTTGAA GCTAACTACA AGCCAAAAAA TGATCTTCTT AAAGCTTTAA 
    CTATAATAGC AACAGCTTTG GCTGGGGCAG CTGCAATAAA CCATTCCTGG 
    GTTGCTGAAC ATCAGGACAT TGCAATGGTG CTAGTGTTTG CTCTCGGTTA 
    TGCAGGTATC ATATTTGAGG AATCACTAGC GTTTAACAAA AGTGGAGTTG 
    GATTGCTCAT GGCCGTTTGC CTATGGGTTA TCAGAAGTAT CGGGGCTCCA 
    TCTACTGATG TAGCAGTTCA AGAGTTGAGT CATACAACCG CCGAAGTTAG 
    TGAAATAGTC TTTTTCTTGC TCGGTGCAAT GACCATTGTT GAGATTGTTG 
    ATGCACATCA AGGATTTAAG CTAGTGACTG ACAATATATC TACTCGAAAT 
    CCAAGAACTC TTCTCTGGGT GATAGGGTTT GTAACTTTCT TCTTGAGTTC 
    TATCCTTGAC AATTTGACTT CCACTATTGT GATGGTTTCA TTGCTTCGGA 
    AACTAGTACC TCCATCAGAG TACAGAAAAT TGTTAGGCGC TGTTGTTGTG 
    ATATCTGCAA ATGCTGGGGG TGCATGGACA CCAATTGGTG ATGTGACGAC 
    CACTATGTTG TGGATTCATG GTCAGATTAC AACGTTGAAC ACAATGCAGG 
    GCTTGTTTCT TCCCTCAGTT GTTTCATTGG CAGTTCCACT GGCTCTGATG 
    TCCCTCACGA GTGAAGCAAA TGGATCTTCT CAGAAATCTT CCAGCTTGCT 
    GTCATCAGAG CAGATGGCTC CTCGAGGACA ACTTGTATTT GCTGTTGGCC 
    TTGGAGCCTT AGTGTTTGTT CCAGTGTTTA AAGCTCTCAC TGGGCTGCCA 
    CCTTTCATGG GCATGATGCT TGGTCTTGCA ATTCTTTGGA TCCTGACAGA 
    TGCGATACAT TATGGGGACT CTGGAAGGCA GAGATTGAAA GTTCCACAAG 
    CGCTGTCACG GATTGATACA CAAGGAGTTC TATTTTTCTT AGGAATTCTT 
    ATGTCAGTTG GCAGCTTGGA ATCTGCTGGC ATTTTGAGGC AGTTGGCGAA 
    CTATCTCGAT GCCAATATTC CGAATGCCGA CCTTATTGCA AGCGCTATCG 
    GTGTAGCATC AGCAATTATA GACAATGTTC CACTTGTTGC TGCAACAATG 
    GGGATGTATG ACCTGACTTC ATTTCCTCAA GATGCGGACT TTTGGCAGCT 
    TATTGCGTTC TGTGCTGGTA CGGGTGGTTC TATGCTTATC ATTGGCTCTG 
    CAGCAGGTGT GGCTTTCATG GGAATGGAAA AGGTGGATTT CTTTTGGTAT 
    TTCCGCAAGG TAAATTGAAC TTTTACTCTA ATAATAAGTG GAGCTGTGGA 
    ACAACTTACA CAATACAGAA TCGTATGTTA CAGAACAAGA AACTTATTCG 
    GTGTGGTTGA TATTTCCCTG TCGAACTGTT AAATCCAATC CATATATGCT 
    CATCATATCT TTCAGTAATT CTGATAAGGG CTGGGAACAG GGAAAAAAAT 
    TGATTTTGGA CTGCAGCTTG GTTTAGCTTC TCTATAGGAA AACAATTGTG 
    ATATCATGCA TTGATGGTAC GTACGTAAGG GCAAGATTGT GCTTTTCTGT 
    AAGGGATGAA ATACCATGCT TTCATTAATT AGTTATAGTT TTATGTTTTA 
    AACCAAGCTC GCTTATTTGT TTACGGCATA ACTTTGTTTA TAGATTTGCA 
    CAAGTGTCTT CTCAATGATT TGGATGTAAA GTAGATTGCC CACCTTTCTT 
    CAACTATTTG TGCTTTTCGG AGAATTGCAA CACTAATTTA TAAGTCCATC 
    GTGCTGTTAG TGTCATCTCA GAACCTCAAA TCCTTAACGA TTGGTAGTAA 
    GTTGTGTGTA CTTGTACGGA ATTAGCAACT ACAAGTGACT AGGCCCGTAG 
    AATATATGTA AACATTGAAA TGATCTATGT CTTTTGAGTC CACATTGTAT 
    TTATACCGCT TGGTTTTGCA GGTGAGTGGT TTTGCCCTTG CAGGTTATGC 
    AGCTGGTATC ATCACTTATC TAGCTGCACA AAATCTCCCT CTATCCCTTC 
    CCACTTCACT AGCCGAGATC CCATTTATCT CGGGGTCATG AAAGGGTGAC 
    CAGATTCAGG TATGGAAATG GACATATTTT ATTGTCTGGC CAGCTTATGT 
    AAGCATAATC AGGATGTGTT GGCAAAGAAA AGATGTCCCA TGATTACATG 
    GGATGGAATA AACGAAAAAT AAATATATGC CCTGATCTCC AACCTCCAAG 
    TTTCCCAACA TTGACCGGAA GGCTTTGGGG TGCTGGTGAA CTATGGTATG 
    CTAAGAGAGG AGCGATTTTG ATAACACAAG CTTAGAGGCT AGAGCTGCAC 
    GCTTGTAATT CACGAATTCT ATTCTATCTT GTTGAGAAGA AAAGAGGAGC 
    TGCACCTTGT GTAAAATTTG AAGATCCTGA AATCATATCA TCACTGGGTT 
    TATTTTTGCC C

    Gene models with high sequence identity

    1. AT3G19490.1 [+] show detail - sodium:hydrogen antiporter 1
      E-value: 0; Score: 714.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Na+/H+ antiporter NhaD-like 2.5e-249
    HMMPanther CATION TRANSPORTER RELATED 2.5e-249
    HMMPanther Na+/H+ antiporter NhaD-like 1.4e-08
    HMMPanther CATION TRANSPORTER RELATED 1.4e-08
    HMMPfam Divalent ion symporter 1.4e-18

    See the detailed result >

    AT3G19490.1

    Model type
    Protein coding
    Short Description
    sodium:hydrogen antiporter 1
    Curator Summary
    member of Na+/H+ antiporter-Putative family
    Computational Description
    sodium:hydrogen antiporter 1 (NHD1); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 2 (TAIR:AT1G49810.1); Has 2659 Blast hits to 2653 proteins in 794 species: Archae - 96; Bacteria - 1787; Metazoa - 39; Fungi - 48; Plants - 76; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR