K26238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26238

Determination of introduced cDNA(s)

  • J023022D14 - Rice Full-length cDNAs - Original: J023022D14

    full reading [+] show sequence

    Nucleotide sequence: J023022D14 - full reading 
    GTCTCAAAAA CCCTAGCCCT CGCGCCGCCG CCGCCGCCGC TCCCCCGCGC 
    ACTCGCCGCT CGCCGCCCGC GAGCTCGCGC CGCTTCGCAA CCATGAAGTT 
    CAACATCGCG AACCCGACCA CCGGGTGCCA GAAGAAGCTC GAGATCGATG 
    ACGACCAGAA GCTGCGTGCA TTTTTTGACA AGAGGATCTC TCAGGAGGTC 
    AGTGGCGATG CTCTGGGCGA GGAATTCAAG GGCTATGTCT TCAAGATCAT 
    GGGGGGTTGT GACAAGCAGG GTTTCCCTAT GAAGCAGGGA GTGCTCACTG 
    CTGGACGTGT CCGCCTTCTT CTTCACAGGG GCACACCTTG CTTCCGTGGG 
    TATGGCAGGC GTGATGGTGA GCGCAGGAGG AAGTCTGTCC GTGGTTGCAT 
    CGTCAGCCAG GACCTATCTG TTATTAACTT GGTGATTGTC AAGAAGGGTG 
    AGAATGACCT GCCTGGCCTT ACTGACACTG AGAAGCCCAG GATGAGGGGA 
    CCCAAGAGGG CCTCCAAGAT CAGGAAGCTC TTCAACCTTT CCAAGGATGA 
    TGATGTCCGC AAATATGTCA ACACCTACCG CAGGACATTC ACTACCAAGA 
    ATGGCAAGAA GGTGAGCAAG GCTCCTAAGA TCCAGCGTCT TGTGACTCCC 
    CTCACCCTCC AGAGGAAGCG TGCCAGAATC GCTGACAAGA AGAAGAGGAT 
    CGCCAAGAAG AAGTCGGAGG CTGCTGAGTA CCAGAAGCTT CTTGCCCAGA 
    GGCTCAAGGA GCAGAGGGAA CGCCGGAGCG AGAGCTTGGC AAAGAGGAGG 
    TCCAAGCTTT CTTCTGCTGC CAAGGCTGCT GCTACCACCG CCTAAGTTGG 
    TTTAGAGCTT GAGATGTTTT AAAATCGTTC ACTCCTGAGT TATAATAGCC 
    CAAGAACCTC TTGCACTATG TTCGATCAAT CCACCCCAGC TACTTTCAGA 
    TTTCTCGAGT AATTGGTGCA ATTTTGCATG AACATGCTGC CTTGTTTGGA 
    ATTCTTTTTT GAGTACCGGA GAATTACCAT GTTAGTGTGT TGGTTTATGT 
    TTTGAAGGTG GCCTTGTTAT TCTGTTGC

    Gene models with high sequence identity

    1. AT5G10360.1 [+] show detail - Ribosomal protein S6e
      E-value: 2e-95; Score: 345.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S6e, conserved site 0
    HMMPIR Ribosomal protein S6, eukaryotic 4.2e-170
    HMMPfam Ribosomal protein S6e 8.6e-56
    Coil coiled-coil 0
    HMMPanther 40S RIBOSOMAL PROTEIN S6 1.5e-154
    HMMPanther Ribosomal protein S6e 1.5e-154

    See the detailed result >

    AT5G10360.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S6e
    Curator Summary
    RPS6A and RPS6B are fully redundant and essential during gametogenesis.
    Computational Description
    embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: ribosomal protein S6 (TAIR:AT4G31700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR