K26334

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26334

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26334

Determination of introduced cDNA(s)

  • J033104I01 - Rice Full-length cDNAs - Original: J033104I01

    full reading [+] show sequence

    Nucleotide sequence: J033104I01 - full reading 
    CTGTGCGGCG GCGGCCGCGG CCGTGCACAC ATGCGCTCCG CCGCCCGCGT 
    CCGCCTCGCG CCCAAACCGA GAGCCAACCA GCCTCCTCCT CCTCCTCCTC 
    CTCCGTTTCG GCTCGCCCCC GCCGCCGTCG CGGCGCTCGG ATCCCACCCC 
    GACGCCTCCT CCTACGCCAG CCTCCTCTCC TCCCTCTCCA GAGAGTGCCA 
    CGCCCGCCAC CCGTTCGACG CAAGTCCCCC GAGAGCCCGC CACTCGCAGA 
    CATGCAGGGC CTTGCACGGC CGGATACTGC GCGGCGGATC ACCCCTCCTG 
    GGACGCCTCG GCGACTCGCT CGTCGAACTG TACTGCAAGT CCGGCCGTGT 
    GGGCTATGCC TGGAGCGCCC TGGGATACGC CGGGGAGCGG GCTTCAGGCG 
    CGGCGAGCTC CCTGCTGTCC TGCCATGCGC GGTCGGGGTC CCCTGGGGAT 
    GTTCTCGGCG CGTTCCGGTA TATCAGGTGC ACTGCCGGTG GCCGGCCGGA 
    CCAGTTTGGT CTTGCGGTCG TTCTGTCGGC GTGTTCCAGG GTGGGTGTTC 
    TTGCTTACGG CAGGCAGGTG CATTGCGATG TGGTCAAGAG CGGGTTCAGT 
    TCCAGTGTCT TCTGCGAAGC GGCGTTGGTG GACATGTATG CCAAATGCGG 
    TGATGTGCCC AATGCTCGCA GGGTGTTTGA TGGGATTGCT TGCCCAGACA 
    CAATATGCTG GTCAAGCATG ATTGCTTGCT ATCATCGAGT TGGATGCTAC 
    CAGGAAGCGT TGGCTTTGTT TTCTAGGATG GATAAGATGG GCTCTGCTCC 
    GGATCAAGTG ACACTTGTTA CCATCATTTC CACACTTGCA AGCTCGGGCA 
    GGCTGGACCA TGCAACAGCT TTGCTGAAGA AGATGCCTAC ACCAAGCACA 
    GTTGCTTGGA ATGCTGTCAT CTCTGGTCAC GCACAAAGTG GACTCGAGTT 
    TAATGTGCTT GGCTTGTACA AGGATATGAG GAGCTGGGGG TTATGGCCCA 
    CTAGATCAAC TTTTGCAAGC ATGCTAAGTG CAGCGGCTAA CATGAAAGCT 
    TTTGTTGAAG GCCAGCAGAT GCATGCTGCA GCAGTAATGC ATGGCTTGGA 
    TGCAAATGTA TTTGTGGGAA GTTCTCTGAT CAACCTGTAT GCTAAATGTG 
    GCTGCCCCAG TGACGCGAAG AATGTTTTCG ACTTGTCCTG TGAAAAGAAC 
    ATTGTCATGT GGAACGCTAT GCTCACAGGT TTTGTTCAGA ATGAATTGCC 
    AGAGGAAGCT ATTAGAATGT TTCAGTATAT GATGAGGTAT ACCCTTCAAA 
    CCGATGAATT TACGTTTGTC AGTATTCTTG GTGCATGCAC CTACTTGAGT 
    TCCTTTTATC TGGGAAAACA AGTACATTGT GTAACAATCA AGAACTGCAT 
    GGATATAAGC TTGTTTGTTG CTAATGCAAC ACTAGATATG TACTCAAAAT 
    ATGGAGCAAT TGGTGATGCA AAGGCACTAT TCAGTCTAAT CCCTTACAAG 
    GATAGTATAT CCTGGAATGC CCTTACAGTA GGACTTGCAC AGAACCTAGA 
    GGAGGAAGAA GCAGTGTGTA TGCTCAAAAG GATGAGGCTG CATGGTATAA 
    CACCCGATGA TGTATCTTTT TCTACTGCAA TTAATGCTTG TTCCAATATC 
    CGAGCCACTG AAACTGGAAA GCAGATCCAT TGCCTGGCCA TCAAATATGG 
    TATCTGCTCA AATCATGCTG TTGGTAGCTC TCTGATTGAC TTGTATTCAA 
    AGCATGGAGA TGTAGAGTCT TCTAGGAAGA TTTTTGCACA AGTAGATGCG 
    AGTAGTATAG TGCCAATAAA TGCTTTAATT GCAGGTTTTG TGCAGAACAA 
    TAATGAAGAT GAAGCAATAC AACTGTTTCA GCAAGTTCTA AAAGATGGTT 
    TAAAGCCCTC CAGTGTTACA TTTTCAAGCA TTCTTTCTGG CTGTAGTGGA 
    TCTCTTAATT CAGCTATTGG CAAGCAAGTT CATTGTTACA CACTGAAGTC 
    TGGTGTTCTA TATGATGATA CTCTCCTTGG TGTTTCATTG GCTGGAATAT 
    ATTTGAAGTC CAAAATGCTT GAGGATGCAA ATAAACTCTT AACAGAAATG 
    CCAGATCACA AAAACCTGTT TGAGTGGACA GCTATCATTT CAGGGTATGC 
    TCAAAATGGT TATGGTGATC ACTCTTTGGT GTCATTTTGG AGAATGCGTC 
    ATTGTAATGT TCGCTCGGAT GAGGCAACAT TTGCAAGTGT TCTTAAAGCT 
    TGTTCGGATG TAACGGCTTT TGCAGATGGG AAAGAGATAC ATGGCCTCAT 
    CACTAAATCT GGGTTTGGTT CTTATGAAAC TGCAACTAGT GCCCTCATAG 
    ACATGTATTC CAAGTGTGGG GATGTCATTT CTTCCTTTGA AGCCTTCAAA 
    GAATTGAAAA ACAAACAAGA TATAATGCCA TGGAACTCTA TGATTGTTGG 
    ATTTGCAAAA AATGGTTATG CTGATGAGGC ACTTCTGCTT TTCCAGAAGA 
    TGGAGGAGTT GCAGATAAAG CCTGACGAAG TTACATTCCT AGGTGTCCTA 
    ATTGCTTGTA CTCATTCTGG GCTAATTTCT GAAGGTCGGC ATTTCTTTGG 
    TTCCATGAGA AAAGTTTATG GATTAACACC TAGACTAGAT CATTATGCCT 
    GTTTTATTGA TCTCCTTGGA CGTGGTGGTC ATCTTCAAGA GGCCCAAGAA 
    GCTATTGACC AGTTGCCTTT CAGACCTGAT GGTGTGGTCT GGGCTACGTA 
    TCTTGCAGCA TGCAGAATGC ACAAGGATGA AGAAAGGGGG AAAATTGCAG 
    CAAGGAAACT TGTTGAGTTG GAACCACAAT ACTCATCTAC ATATGTGTTG 
    CTTTCAAGCT TACATGCTGC TACTGGTAAC TGGGCTGAAG CTAAGGTAAC 
    CAGAGAATCA ATGCGAGAAA AAGGAGTGGC AAAATTTCCA GGATGTAGTT 
    GGATTACCGT GGGAAACAAG ACAAGCTTGT TTCTTGTACA GGATAAATAC 
    CACCCTGACA ATCTTAGAAT CTATGAAATG CTTGGTGATC TAACTGGAAT 
    GATGAAGAAA GATAACGATA TTGATGAGTA TGGTCTACTT TATTCAGCTG 
    AAATGCTTGC TTGAGTGTGC TGGTGCTGCT TAAGAGCAAA GGGCCTTAAT 
    TCATCTTCTG GATCATCGAG GACCTTCAAT AAATGCATGT TTAGTTGAGA 
    GATTTGGAAT GTTATGCATA TTATTTATTC AAAAGTACAT ATACTCGTAC 
    CAATAATTGC TTTACTTGCT GCAATTGCAG CACCAGACTT TGAAAAGGAT 
    CAGCACCGCT AGGTGATATT GGATTGGCAA ATATCAGAAG TGGACATGAC 
    AATGGGCCTG CTATTTTTCA TCTAAATGAT CCTCAGAGGA TTATTTGGAC 
    GGAGGACAAC TGGCCATATT TGGAAAAGAA CCTACTCAAG TTAATTGTTA 
    TGTCAGAAAC AGTCCAAACA GCAAAGGCAC TAACACTGGC CATGTGAATA 
    CTTTTCTTCA ACTGTTGTGA AAAAGAACTT GAATAATTGG CAAGTATCTA 
    TCTACATAAA CTGTTATAGA TGTTCACAAA TGAAACAGCA TGTTGGTCCA 
    GCACGTTGCT TAGTTCGTGG CTACTGTCTT CCCTTCACAA ACATCACATA 
    CAATTGAACC AAGGCCTTCA CAGTATGGAC ACTTCGTATC TTCACCGACC 
    CACTCCAAAA ACTGCATTTT GAGGGGTAAA CAGAAAGGAA GAAAGAAAAA 
    GGTCTTGTCA GGAGTCGCAA CTCACAAGCA GCTCATTTCT CAATACATTA 
    CAAATGCTGT ACATGTTGTG CCACCAAGCA GCAAATGTTA TTACCTACGC 
    ACATGAGGCG GCCTTCACCC CGACAAGAGA TGCACTTCTT AGTTGATGCA 
    TTGGTAGCGC TGCTGATTGG TTTATTCTTC TGTGTTAGCC TAGATGGGTC 
    TTCCCACCTG TTTTCACCGA TGAGAAACAC TCTATTTTCA GACAACCCTA 
    CTCCTGAGAC ACCATTTCCT TTCACAACAG TTTGTTGAAT CTCTGCAATT 
    TCTGTTATGG AGGGAATGGC TGCTCCATTT ATGCCATCCT ACAAGAGAGT 
    TGGATTAGAA TATCATGCCA TGACT

    Gene models with high sequence identity

    1. AT3G09040.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 0; Score: 726.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 3.3e-24
    superfamily TPR-like 8.4e-16
    HMMTigr Pentatricopeptide repeat 1.5
    HMMTigr Pentatricopeptide repeat 1.1e-06
    HMMTigr Pentatricopeptide repeat 0.47
    HMMTigr Pentatricopeptide repeat 0.01
    HMMTigr Pentatricopeptide repeat 1.3e-05
    HMMTigr Pentatricopeptide repeat 0.00025
    HMMTigr Pentatricopeptide repeat 0.61
    HMMTigr Pentatricopeptide repeat 9.9e-06
    HMMTigr Pentatricopeptide repeat 0.78
    HMMTigr Pentatricopeptide repeat 2.1e-07
    HMMTigr Pentatricopeptide repeat 0.27
    ProfileScan Pentatricopeptide repeat 6.489
    ProfileScan Pentatricopeptide repeat 11.213
    ProfileScan Pentatricopeptide repeat 5.305
    ProfileScan Pentatricopeptide repeat 9.416
    ProfileScan Pentatricopeptide repeat 7.3
    ProfileScan Pentatricopeptide repeat 5.568
    ProfileScan Pentatricopeptide repeat 9.964
    ProfileScan Pentatricopeptide repeat 6.61
    ProfileScan Pentatricopeptide repeat 9.756
    ProfileScan Pentatricopeptide repeat 5.086
    ProfileScan Pentatricopeptide repeat 10.369
    ProfileScan Pentatricopeptide repeat 6.456
    ProfileScan Pentatricopeptide repeat 6.248
    ProfileScan Pentatricopeptide repeat 7.903
    ProfileScan Pentatricopeptide repeat 5.722
    ProfileScan Pentatricopeptide repeat 5.437
    ProfileScan Pentatricopeptide repeat 6.665
    ProfileScan Pentatricopeptide repeat 6.259
    ProfileScan Pentatricopeptide repeat 11.86
    ProfileScan Pentatricopeptide repeat 6.697
    ProfileScan Pentatricopeptide repeat 5.404
    ProfileScan Pentatricopeptide repeat 7.081
    HMMPfam Pentatricopeptide repeat 1.5e-05
    HMMPfam Pentatricopeptide repeat 0.35
    HMMPfam Pentatricopeptide repeat 0.0005
    HMMPfam Pentatricopeptide repeat 0.027
    HMMPfam Pentatricopeptide repeat 1.6e-05
    HMMPfam Pentatricopeptide repeat 0.044
    HMMPfam Pentatricopeptide repeat 0.34
    HMMPfam Pentatricopeptide repeat 0.0024
    HMMPfam Pentatricopeptide repeat 0.032
    HMMPfam Pentatricopeptide repeat 0.064
    HMMPfam Pentatricopeptide repeat 7.5e-07
    HMMPanther SELENIUM-BINDING PROTEIN 7.5e-237
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7.5e-237

    See the detailed result >

    AT3G09040.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR