K26345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26345

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26345

Determination of introduced cDNA(s)

  • J023134C12 - Rice Full-length cDNAs - Original: J023134C12

    full reading [+] show sequence

    Nucleotide sequence: J023134C12 - full reading 
    GAACCTCTCC CTCCATTCGC ATTACCGCGC AAAGGAGGAA GAAGAAGAAG 
    AACTCACTCG CAGGAGCACC AATGGCGAAT TCTGCGTCAG GGCTGGCGGT 
    GAACGACGAG TGCAAGTTCA AGTTCCAGGA GCTGAAGACG AGGAGGGGGT 
    TCAGGTTCAT CGTGTTCAAG ATCGACGACA AGGCCATGGA GATCAAGGTG 
    GAGAGGCTCG GGCAGACTGC CGAGGGCTAC GAGGACTTCG CCGCCACCCT 
    CCCCGCCGAC GAGTGCCGCT ACGCCGTCTA CGACCTCGAC TTCGTCACCG 
    ACGAGAACTG CCAGAAGAGC AAGATCTTCT TCTTCTCCTG GTCGCCTGAC 
    ACGGCGAGGA CAAGGAGCAA GATGCTGTAC GCGAGCTCCA AGGACAGGTT 
    CAGGAGGGAG CTGGACGGAA TCCAGTGCGA GATTCAGGCC ACAGACCCCA 
    GCGAGATGAG CCTCGACATC ATCAGAGCCA GAGCTCACTG ATGATCATAT 
    CATTTCATCA TCCAACACCA CCAGATTAAT TAATTCATTC CCAACGTCGA 
    TCGCCTTATT CAACCCCAGA TCCATGCATA TATATATGCC CATGGGTTAA 
    TATATCATCA ATTATGGGGT TTATGTCCGC TTAAATTTAC CCTACGTACG 
    TTTTGATCCT CGCAAAAAAA AACACATACA TATATATATA TACCGTTTTG 
    ATCGACTATT TATACGTTGT TATACGACAT TGATGTCGTC CAAGTATTAT 
    TATCCTATTA TATATAATTC CTTCATTTCA TTCTATTTTT CTTCTGCTTA 
    TATCTTCAAC TTTTCATTTT TGTAATTTGT AAGTTGTATT GATGCAATTT 
    GTTGGCAACA AGAATACACT TTTTCTATTC ATGT

    Gene models with high sequence identity

    1. AT4G00680.1 [+] show detail - actin depolymerizing factor 8
      E-value: 1e-55; Score: 213.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Actin-binding, cofilin/tropomyosin type 1.6e-59
    HMMPfam Actin-binding, cofilin/tropomyosin type 3.9e-45
    HMMPanther COFILIN-RELATED 3.4e-66
    HMMPanther COFILIN-RELATED 3.4e-66
    superfamily Actin depolymerizing proteins 1.2e-44
    ProfileScan Actin-binding, cofilin/tropomyosin type 38.112
    Gene3D no description 4e-49

    See the detailed result >

    AT4G00680.1

    Model type
    Protein coding
    Short Description
    actin depolymerizing factor 8
    Computational Description
    actin depolymerizing factor 8 (ADF8); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 11 (TAIR:AT1G01750.1); Has 1612 Blast hits to 1604 proteins in 270 species: Archae - 0; Bacteria - 5; Metazoa - 759; Fungi - 157; Plants - 515; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR