K26403

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26403

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26403

Determination of introduced cDNA(s)

  • J023037B21 - Rice Full-length cDNAs - Original: J023037B21

    full reading [+] show sequence

    Nucleotide sequence: J023037B21 - full reading 
    GGGGAGCCCT TCCGCCGCCG CCGCCGCCCC GATGTTGGGA CACCTCCGGC 
    GATCCTCCCA ACGACTGCCC GTAGCCAACC TCGCCGTATA CTCGATCCAG 
    AGTTCACATA TTGAGTTCAT AGCCGGCTGG TGTAGAAACC ATTCTACCAG 
    GAATTTCTCT GTAGATACAA GTAATAAAGT TTCCAACGAT CGGGGGTATC 
    AATCAAGGGA GTTGAAACCA AGCCTTGTGA AGGATGATGT TGCAATCATC 
    AAACACATAC AAAACAGTAC AAAGGAATTG AAACAAGGGC CAGTTGGGAA 
    AAATCTATCA TCGGCAGAGA AAAGGAAATT TCTTGTCAAC ACTCTGCTTG 
    ACCTGGAAGA TTCAAAAGAA GGTGTTTACA GCACTCTGGA TGCTTGGGTT 
    GCCTTTGAAC AGGAGTTTCC TGTGGCCTCG TTAAAGCAAG CACTTGTAGC 
    TCTTGAAAAG GAGGAACAGT GGCATAGAAT CGTCCAGGTG ATAAAATGGA 
    TGCTGAGTAA AGGACAAGGG AAGACTATCA GAACATATGA GCAATTAGTG 
    TGTGCGCTTG AGAAGGACAA CAGAGCAGAT GAAGCTTGCA GAATCTGGGA 
    GTTGAAGATA GCCCATGATC TACAATCAGT TCCATGGCGG TTTTGCCGTC 
    TTATGTTGGG TATTTACTAC AGAAATAATA GGCTAGATAC GCTTGTCAAG 
    CTCTTCAAGA ATCTTGAAGC ATGTGGTCGT AAACCTCCAA GCAAAGATAT 
    TGTACGGAAA GTTGAAGACA CATATGAAAT GCTTGGTCTA GTAGAGGAGA 
    AAAAGGAATT GCTTGAGAAA TACAAGGAAT TGTTTGACAA GCCATCAAGT 
    AATGATAGAA AGAAAGGGCG GCAGTTCAAA AAGGCTGAGA AGAACACGAA 
    AACCGGCTAG ACATGTAGTG ATGCCTGCAC CTCTAAAATC TACAGCATCG 
    AGCTTCCAGG ATGGCATAAG CTTAGAGCTT CACAGTGCAG GTTGGAAACA 
    TCTGAATATC TGCCAGTCTC TTGCCCTTGA GTTTCACAAT GCAAGTATGT 
    ATCCCCCGGA AAAAAAAAAT AGAGTATGTA CGGTAGTACA GTTGTTGGAA 
    TATAAAGCTG TGATCATTGT TTCCTACAAC TGTCGCTTCA AGCATTGTTG 
    TCATTCCTTT TGCCTCCGTC CAGATTTGTT TCTGACAGTG TATCCATACT 
    CAGATCAGAG CCTGATGTGA TGCAGCAAGC AATGGTATTT GCTATGCCCT 
    CTGAATGTTA ATACATCCCG TATTTTTT

    Gene models with high sequence identity

    1. AT1G04590.1 [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (T...
      E-value: 2e-54; Score: 210.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G04590.1

    Model type
    Protein coding
    Computational Description
    BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR