K26834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26834

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26834

Determination of introduced cDNA(s)

J033079N13 - Rice Full-length cDNAs - Original: J033079N13

full reading [+] show sequence

GACGGGGAAC CATCTCTCTC TCCTCGCCCC CGCCGCCGCC GCTGCTCCTC 
CTCCGATCGG TGGAGCAGCA GCCTTCATGA AGGGCGAGGC GGGTCTCGAT 
CGGTGGAGGG GGAAAGATTT CTCCTCCAGT TTTCCTCTAG TTTTGATCCT 
GGAGGAGGTG GCTGCTGCAT CTTCTTCTTC ACCGAAGATT GGAGGAGTGG 
ATTTCGTGTG GTTGTTGCGG CCGACCGCTT TCTTGCTCTC TTGGCTCGTC 
GGCCTCCGCC GCCGATGCTG CGGGATGCCG TCCCCCGACG CCGCCGCCGG 
CGATATTGAG AGCGCCCTCG ACGACTTCGC CCGCGCCGAC GCCGACTGCA 
TCGCCGCCGC CCTCGCCTGC GGCCGCACCA GCTTCTCCTA CCGCCGCCTC 
CCCGAGCCGC GCCGCCTCCG CCTCACCGTC CGCAAGCTCG ACGACTCCTA 
CTTCGATGTG CAAATCGCGA GGTCAGCCGC GGTGTGGGAG CTCAAGGCGG 
CCATCGAGGA CGTGTTCGCC GCGCTCTACG ATGAAACGGA CAACAAGGCC 
ATCTCTTGGC AGCACGTGTG GAGCCACTTT TGCTTATGTT TCAAGGACGA 
GAAATTGACA GATGACAAGG CAACATTGCG TGCATTTGGT ATAAGAGATG 
GTGATGAGGT TCATTTTGCC CAGCATCTTT CTGTTGAATA CAGACCCTGC 
AAGTCCCTTT CCCTCAGAAG GTCAAGGACT TCATTGGATG ATTTCAGTGC 
TAGGTCAAGG AGTTTGTTGG ACGATCTCGG CGAAGATGAT GGTGATAAGT 
TTATCGACAC GAGGCATTCT ACTAGTGTTT TGGAGGAAGG GCTATATGTT 
TATCAGCACG ATGAGGAGCG CATGGAAGAG AGTCGCAAGA AGGGAGGCTT 
CTTTAGCGGT TGGTTCTCCT ATTCTAGATT GAGGGGCAAC AGTAGGACAC 
ATTCAGAGGA TGCCATCCAA TCCTCCTGCG AAAAGAGAGA TACTCGAACT 
CGGCCAAAGC TGGGGAGATG GTTGTCTTCC AAAAAAACTA AAGGCACATA 
GCAATCTAGA TTGCCAACTG TATCTCACAC GTGTTGCTTT GTTCTTCTGA 
AATGAAAATC AAAATTACAT TCTTGTCG

Gene models with high sequence identity

AT1G80060.1 [+] show detail - Ubiquitin-like superfamily protein
E-value: 2e-21; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	2.3e-37
ProfileScan	Ubiquitin supergroup	8.807
superfamily	Ubiquitin-like	5.7e-23

See the detailed result >

AT1G80060.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G32270.1); Has 129 Blast hits to 129 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR