K27050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27050

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27050

Determination of introduced cDNA(s)

  • J023006B12 - Rice Full-length cDNAs - Original: J023006B12

    full reading [+] show sequence

    Nucleotide sequence: J023006B12 - full reading 
    GACACGAATC GGACTTCGGG GGCTCTTCCG CCGCCGCCGC CCCGCCCTCG 
    CCGCCGGCGG CCCGGACGAT GTTGGGCCAC CTCCGGCGAT CCTCCCACCG 
    AGTACTCATT GCCAACCTCG CCGTCTACTC GATACAGAGT TCACAAATTG 
    AGTTCATAGC AGGCTGGTGT AGCAACCATA CCACCAGAAA TTTCTCTGCA 
    GATACAAGTA ATAGAGTTTC AAATGATCGA GGGCATCAAT CAAGGGAGTT 
    GAAACCAAGT CTTGTGAAGG ATGATGTTGC AATCATCGAA CGCATACAAA 
    ACAGTACAAA GGAATTGAGA CAAGGCCCAG TTGGGAAAAA TCTGTCATCG 
    GCGGAGAAAA GGAAATTTCT TGTCAACACT CTGCTTGACC TGGAAGATTC 
    AAAAGAAGGT GTTTACAGCA CTCTGGATGC TTGGGTTGCC TTTGAGCAGG 
    ATTTTCCTGT GGCCTCAATA AAGCAAGCAC TTGTAGCTCT TGAAAAGGAG 
    GAACAGTGGC ATAGAATCGT CCAGGTGATA AAATGGATGT CGAGCAAAGG 
    ACAAGGGAAG ACTATCAGAA CATATGAGCA ATTAGTGTGT GCACTTGAGA 
    AGGATAATAG AGCGGATGAA GCTTGCAGAA TCTGGGAGTT TAAGATAGCC 
    CATGATCTAC AATCAGTTCC ATGGCGGTTT TGCCGTCTTA TGTTGGGTAT 
    TTACTACAGA AATAATAAGC TAGATAGACT TGTCAAGCTC TTCAAGAATC 
    TTGAAGCATG TGGCCGTAAA CCTCCAAGCA AAGATATCGT ACGGAAAGTT 
    GAAGATGCAT ATGAAATGCT TGGTTTAGTG GAGGAGAAAA AGGAATTGCT 
    TGAGAAATAC AAGGATTTGT TTGACAAGCC ATCGAGTAAT GACAAAAAGA 
    AAGGCCGGCA GTTCAAAAAG GTTGAGAAGA ACATCAAGCC GGCTTAGACA 
    TGTGATGGGA CACGCCTGCA CCTCTAAGCT TAGAGCATAG AACGGAAACA 
    TCTGAATAGA AATCTGCCAG TGAAGTTGTT ACTCTTTCCT TTGGGATGAG 
    AATCTGATTA TCAACAGTTA AGATTAGAAG TATGCATGGT AGTGCAGTTA 
    ACATTGTTGT GAGTCATTTT CCTTCGTCCA GATTTGTTGC TGACAGTGCA 
    TCCATATATA ATGGGATGAG AACCTAATCT AATGCAGCAA GTAATAGTAT 
    TTGCCGT

    Gene models with high sequence identity

    1. AT1G04590.1 [+] show detail - BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (T...
      E-value: 7e-54; Score: 208.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G04590.1

    Model type
    Protein coding
    Computational Description
    BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR