K27139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27139

Determination of introduced cDNA(s)

  • J013157K21 - Rice Full-length cDNAs - Original: J013157K21

    full reading [+] show sequence

    Nucleotide sequence: J013157K21 - full reading 
    GGCTTCTCAA TTTATCATTG TTTAACTTTT TTCTTCATCC GATTTTCGGT 
    TCGGACGAGA GCTCTATTGC CGTAGGAGCA GGAGAAGGGA GCAGGGAGAG 
    CGCCGCCGCC GCCGCCGCCG CCGCACCGGC GCTGTGCCGA CGAGATGAGC 
    CTCTCCCACC ACCTCCCCCC GCCGCCGGGA GACCCCTACT ACGTGTACGC 
    GCCGCACCCC TACCCAGATC CGCAGCGGCA GGGGGTACTC ACGCTCTTCG 
    TCGCCGGCCT CCCTGACGAC GTGAAGCCCC GGGAGATCCA CAACCTCTTC 
    TCCAGCCGCC CCGGCTTCGA CCACTGCCTC CTCGAGTACA CCGGCCGCGG 
    GAACCAGGTG GTGGCCTTCG TGTCATTCGT TAATCATCAG GCGGCTCTTT 
    CGGCAATGTC TGCTTTAAAT GGGACTGTAT TTGATCCAGA TACTGGAGAC 
    CGTTTGCACA TTGAGCTAGC TAAATCGAGT TCACGTAAAC GTCATGGAGA 
    TGGTGGGGTT TATAGAGTTG TTGACAAACG ACTTAAGAGA AAAGAAAGAG 
    CTGCTGACCA TGAGAATGCT GGTGATGGAG GTAATGATGA TGATGCATGG 
    GGCGAGGATG ATAATGGTGG TAATGATGGA GATGGTGGAT CTGATGAGCC 
    ATTGGACACA GAAAATGATG ATTCCGACGA AAAGAATGAA TTACCAGCAG 
    AACGGAGTAG TGGTCAACCA GGGCTTAAGC AGCATAGGGG GCAATCTCTT 
    TCAGATGATC AACCAGACAA ATTGTCAAGT GATATTCCAC CTTGTTCTAC 
    TTTATTTGTT GCAAATTTGG GTCACTCATG CACAGAGGAA GAGCTAAAGG 
    AAGTTTTATC TAAGCAACCT GGATTTCATT TGCTTAAAAT GCGCCGTCGT 
    GGTGGAATGC CAGTAGCTTT TGCTGATTTT ACGGATATCG AGTCCTCTAC 
    GGCTGCTATG GATGCTCTAC AGGGCACTGT GCTAGCTTCT TCTGACGCTG 
    ACGGCTTGCA GATTGAGTAC GCAAGGTCAA AAATGAGGAA AAGCTAGCTC 
    ACTAGCTACT TGTTCTACAT CAGCAGTGAG CGCTGACCAC CGGGGATCGA 
    ACATGAAGGT ATATCATTTG CCATTTGGCA TCCCATGCCA GCACATGTAA 
    TCGCCAGGCT GTAGCTGTGC TCTTTAATTG AATTCTAAGA ATATAGATCT 
    GGGCAATCAA ACACTTTGTC ACAGAGTAGT TGGATCGTTT AATTTGGTTT 
    CGCTCTCGTT CAGAAACTTC TCTGTCAGAG TCGGATCGTT AATTGTACTT 
    CTTGTTTCTG AAACTTTCCG GAGACAACCA GGCGGCTAAC CGGCTCTATC 
    AACAATCAAT TTGATGTATG TGCTCTTCTT TGTGCATATT GAACAATTAA 
    TTTGATGTGC TCTTCTTGCC GCCATCTTTT G

    Gene models with high sequence identity

    1. AT3G13700.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 6e-65; Score: 245.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 2.4e-05
    HMMSmart RNA recognition motif, RNP-1 1.7e-05
    superfamily RNA-binding domain, RBD 6.2e-14
    superfamily RNA-binding domain, RBD 7.4e-13
    ProfileScan RNA recognition motif, RNP-1 11.588
    ProfileScan RNA recognition motif, RNP-1 11.281
    Gene3D Nucleotide-binding, alpha-beta plait 2.7e-09
    Gene3D Nucleotide-binding, alpha-beta plait 2.2e-16
    HMMPanther RNA-BINDING PROTEIN 4.9e-13
    HMMPfam RNA recognition motif, RNP-1 3.2e-08
    HMMPfam RNA recognition motif, RNP-1 1.6e-09

    See the detailed result >

    AT3G13700.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR