K27301

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27301

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27301

Determination of introduced cDNA(s)

  • J023061I01 - Rice Full-length cDNAs - Original: J023061I01

    full reading [+] show sequence

    Nucleotide sequence: J023061I01 - full reading 
    GACACACTTC CCAACCCATC ACCCTCCCTT CCCCAGCTTC CCCTCTCCCC 
    TTCCGATCCC TCCTCACCGC CGCGCCGCCG CTTCCCCTCC TCCGACGACG 
    AGACCCGCCG GCCATGGCGC TCCATCTCAC CGCCGCCCCG ACCATTGCCC 
    CCTCCGCGGC CGCCGCCTGC AGGTCGCTGG CGCCGATGCC GCCTCTCCCC 
    GCCGTTTCGT GCTCGAGTAG GTGGTGGAGG GGGAGGCGGC GGTGTGTCGC 
    GGTGGTGGCC ATGGCGGCGG CGGCGGCGGC GGACGGGGAG AGGCCGCATG 
    GGCACGCGGC GGAGGCTGGC ACTGGGAGGA TGAACCTCAA CGAGTACATG 
    GTCGCCGTCG ACCGCCCGCT CGGCGTCCGC TTCGCGCTCG CCGTCGACGG 
    ACGCGTCTTC GTCAACTCCC TCAAGAAAGG GGGGAATGCG GAGAAATCAC 
    GGATTATCAT GGTAGGGGAC ACTCTGAAGA AGGCTGGCAG TCGTGAGGGC 
    GTGGGTTTTG TTGACATCAG AGACCTAGGT GACACGGAAA TGGTGTTGAA 
    GGAAACGTCA GGGCCATGCG ATCTTGTCCT TGAGAGGCCA TTTGCTCCTT 
    TCCCGATACA TCAGTTGCAT CAAAATGAAG ATTATCATCT CCTATTTAAC 
    AAGGGTAGGG TTCCTCTTAC TAGCTGGAAC GGTGCTCTAT TATCATCAAA 
    GCTGAATGAA TCATCTGAGG GGAACGGAAA TCCTGGATTT GCCATATTCT 
    CGCCAAGGCT GCTAAATTCA CATGGATGGG CAGTTTTGTC TAGTGAGCAA 
    GATGGACTTA ATCAGCGCAG TACTAGCCTT GCAAATCGTA TAAGTGAGAT 
    TGTTGGTTTG TACTCTGATG AGGATGATGC AGATACTGAA TGGGCACATG 
    GTAGCTTTCC TTTGGAGGAG TACATTAAAG CACTAGACCG TGCTAAAGGT 
    GAACTGTACT ACAATCATTC ACTTGGTATG CAATACAGCA AGATTACAGA 
    ACAAATATTT GTTGGATCAT GCCTACAAAC AGAAAGAGAT GTGAAAATGC 
    TATCAGAGAC TATGGGTATC ACTGCTGTTC CGAATTTTCA AAGTGAAAGT 
    GAGCGCACCA ATTGGGGAAT CAATTCAGAG GCAATCAACA ATTCTTGTCG 
    CGAGAACAAC ATTTTGATGG TTAACTACCC TATACGAGAG GTTGATTCAA 
    TGGACCTGAG GAAGAAGCTT TCTTTCTGTG TTGGTCTTCT ACTGCGGCTT 
    ATAAGGAAGA ACTACCGCAT ATATGTGACT TGTACCACTG GATATGATAG 
    ATCACCAGCA TGTGTGATTG CATATCTACA TTGGGTGCAG GATACGCCTC 
    TCCATATTGC TCACAAGTTC ATCACTGGTT TGCACTCCTG TAGACCTGAC 
    AGAGCTGCAA TTGTGTGGGC AACATGGGAT CTCATTGCAC TAGTTGAAAA 
    CGGAAGACAT GATGGTACTC CCACACATTC AGTATGCTTT GTTTGGAACA 
    GTGGTCGGGA GGGTGAGGAT GTGGAATTGG TGGGGGATTT TACAAGTAAC 
    TGGAAAGACA AAGTAAAGTG TGACCACAAA GGTGGGTCAA GATATGAAGC 
    TGAAATTCGA CTTCGACATG GGAAGTACTA TTACAAATTC ATAGCAGGGG 
    GCCAGTGGAG GCACTCGACT TCATTGCCAA CAGAGACTGA TGAACATGGG 
    AATGTCAACA ATGTTATCAG GGTTGGTGAC ATCGCTCGTA TTCGGCCTGC 
    TCCCAGCCAA CTGCAGATAA GGGACCCAAC TGTTGTCAAG GTCATAGAGA 
    GGGCACTAAC TGAGGACGAG CGATTCTTAC TGGCCTTCGC TGCACGCCGC 
    ATGGCATTTG CAATCTGCCC AATCAGATTG TCTCCCAAGC AATGAACACA 
    TCATAATACC TACTGAGATG AACTGCAGCG AAAATTTCAG CCCTTTCAAG 
    ACGAACTGAG GCGCGGTATA TCGATGTTCC TTCCCTTACA TAGCAAAACT 
    CATGTAACAT TGGGACATTC GGGGCACCAC CTGCCTGTTC AAATCAACTG 
    GACATTGCTA GAGAGGGGTT GTGGACATTG CTCAGCAGTT CATCACAGTG 
    CATACAACTT GTGTAACAGT GTAACTCTAT GAACTGTAAT ATGAGATAAA 
    CTTCATTTTG GTCT

    Gene models with high sequence identity

    1. AT3G01510.1 [+] show detail - like SEX4 1
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily (Phosphotyrosine protein) phosphatases II 7.3e-15
    Gene3D no description 1.1e-19
    HMMPfam Dual specificity phosphatase, catalytic domain 1.7e-09
    HMMPanther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNI 1.8e-09

    See the detailed result >

    AT3G01510.1

    Model type
    Protein coding
    Short Description
    like SEX4 1
    Curator Summary
    Encodes a putative phosphatase, LSF1, required for normal starch turnover in leaves.
    Computational Description
    like SEX4 1 (LSF1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: starch catabolic process; LOCATED IN: starch grain, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), PDZ/DHR/GLGF (InterPro:IPR001478), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G52180.1); Has 834 Blast hits to 834 proteins in 152 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 61; Plants - 322; Viruses - 12; Other Eukaryotes - 115 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR