K27306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27306

Determination of introduced cDNA(s)

  • J013087B08 - Rice Full-length cDNAs - Original: J013087B08

    full reading [+] show sequence

    Nucleotide sequence: J013087B08 - full reading 
    GATATGGTCT TGCTGCTCAT CTGTCAATTT TTCTCTGTTT CATCATCAGT 
    GAAAAATCTG TTATTTTGTG CAAAGATGTA AGATTTATGT TTGTTCCCGC 
    TGCTAATCGT TACACCGTTT GAAACCTTTT GCAGAAGGAA ATTGTCATCA 
    GGCTGCAGAG CTCTGAGAAG GGCCACAAGA AAGCTATCAA GGTTGCTGCT 
    GCAGTCTCCG GTGTGGAATC CGTGACGCTC GCCGGCGAGG ACAAGAACCT 
    GCTGCTGGTG ATCGGCTTCG GGGTGGACTC CAACGACCTC ACCGAGAAGC 
    TGCGGAGGAA GGTCGGCCAC GCCGAGGTGG TGGAGCTGCG CACCGTCGAC 
    GCCGACGAGC TCATGCGCGT CGCCGCCGCC AACCAGTACC CGTACCGCTA 
    CTACCCCGGC GCGCCGCCCC CGGCCCCGTA CTACGGCAAC GGCGGGTACC 
    CTCCTCCTCA CCAGCGCGGC GGCGGCGGCG GCGGCAGCGG CGGTGGCTAC 
    TACACGCCGA TGACGATGGC CACGGGTGGC TACTACGGCG GCGGCGGCGG 
    CGGGTACCCG CAGTACGGGC AGTCGTCGTC GTACCCGCAG TACGGGCAGT 
    CGTCGTCGTA CTACCCGCCG GCGGCGGCGG CGACGACGAA CACGCACACC 
    GTCGTGCACC ACCAGTACGC CAACAACGAC CCGGACAGCT GCGCCATCAT 
    GTAGCTGCAC CAGCTAGTGT ACGATCGATG CTGCTTCTGC TCGCGCGCGA 
    GCATGCCGGC CGTCGTCGTC TCGATCGTCA CGATGATCGG ATGATCGGAG 
    GACATATTGC GACCGAATCT AGTAGCTGAT TGTCCCAATC GATAACTGGC 
    CCAAAGTACG TAGATATACC TTGAATTTTC TGTGTGATGA TGAGGCCGAT 
    TTGATTCCGT GTGATTACTG AACAACAGAC AGGTACGTAC CTGTTGTCTG 
    AAACTCTGAA GTCTGAACGT TATATGTGCA GTAGTATATG TGTAGTAGCT 
    GCTCCCGGCC TCCAAGTGTA TACGGTGTGC AAGTGTAAAT TAGGTGTACT 
    AGGGAGATAT ATATAAGGTG CAAGCGACTT TATAGTTC

    Gene models with high sequence identity

    1. AT4G05030.1 [+] show detail - Copper transport protein family
      E-value: 4e-07; Score: 52.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 1.6e-88
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 1.6e-88

    See the detailed result >

    AT4G05030.1

    Model type
    Protein coding
    Short Description
    Copper transport protein family
    Computational Description
    Copper transport protein family; FUNCTIONS IN: metal ion binding; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT3G20180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR