K27445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27445

Determination of introduced cDNA(s)

J033051E10 - Rice Full-length cDNAs - Original: J033051E10

full reading [+] show sequence

GATCATATCG CTCACTCTGC ATGGCTTCGG CTTCTTCTGT CAGCTTAATG 
CTGCTCGTGG CTGCAGCTAT GGCCTCAGCC GCCTCGGCGC AGCTGTCGGC 
GACGTTCTAC GACACGTCGT GCCCAAACGC ATTGTCCACC ATCAAGAGCG 
CAGTGACGGC CGCCGTGAAC AGCGAGCCCC GAATGGGAGC CTCGCTGGTC 
AGGCTGCACT TCCACGACTG CTTCGTCCAA GGCTGTGACG CGTCTGTTCT 
GCTGTCCGGC CAGGAGCAGA ATGCAGGCCC GAACGCTGGG TCACTTCGGG 
GATTCAACGT CGTCGACAAC ATCAAGACGC AGGTCGAGGC CATCTGCAGC 
CAGACCGTCT CCTGCGCCGA CATCCTCGCC GTCGCCGCCC GTGACTCCGT 
CGTCGCGCTC GGAGGGCCGT CGTGGACGGT TCTATTGGGA AGAAGGGACT 
CCACCACTGC GAACGAAAGC CAAGCAAATA CCGACCTCCC TGCCCCTTCC 
TCTAGCCTCG CTGAACTTAT CGGCAATTTC TCCAGAAAGG GACTCGACGT 
AACCGACATG GTTGCTCTCT CAGGCGCACA CACGATCGGG CAGGCGCAGT 
GCCAGAACTT CAGGGACAGG CTCTACAACG AGACAAACAT CGACTCCAGC 
TTCGCGACGG CGCTCAAGGC CAACTGCCCA CGGCCGACGG GCAGCGGCGA 
CAGCAACCTG GCGCCGCTGG ACACGACGAC GCCCAACGCC TTCGACAGCG 
CCTACTACAC CAACCTGCTG TCCAACAAGG GCCTCCTGCA CTCCGACCAG 
GTGCTCTTCA ACGGCGGCAG CACGGACAAC ACGGTCAGGA ACTTCTCCTC 
CAACACGGCG GCGTTCAACA GCGCCTTCAC GGCGGCCATG GTGAAGATGG 
GGAACATCTC GCCCTTGACT GGAACCCAGG GGCAGATCAG GCTCAACTGC 
TCCAAGGTTA ACTAGCCGGT GATGACGAGT ACGTGATGGT CTCAGGGAAT 
AAAGCTAGGC CCCGACATTG CTGCCAATAG CGTGCAGCTA GCTGTGGCCA 
TCTCATCACT TTCATGGTTC AATGGTTTCA TCAGCAAGTG CACGGAACAG 
ACTAGAGAGT GTAGGTGTAT GCATGTGTGA TGTCATGTAA CGAGTTGCCA 
TGCAAAGGCA TGAGGATTAC GGACCTATCT TTCGTCGTAA TCCTAGCAGC 
TACAGATTTC AACTGTCGTG TTAACCAAGT GAAGTGCTAG TTTCG

Gene models with high sequence identity

AT5G05340.1 [+] show detail - Peroxidase superfamily protein
E-value: 3e-100; Score: 362.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Peroxidases heam-ligand binding site	0
PatternScan	Peroxidase, active site	0
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Plant peroxidase	8e-74
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1e-35
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1e-35
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1e-35
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1e-35
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1e-35
Gene3D	no description	6.9e-58
ProfileScan	Haem peroxidase, plant/fungal/bacterial	76.082
superfamily	Haem peroxidase	1.6e-112
HMMPfam	Haem peroxidase, plant/fungal/bacterial	1.9e-82

See the detailed result >

AT5G05340.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Computational Description: Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR