K27533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27533

Determination of introduced cDNA(s)

J013102D17 - Rice Full-length cDNAs - Original: J013102D17

full reading [+] show sequence

GGCTTCGCTT GCGCCAATCC AAATCGCCGC CTCGCACCAA TCCATCCCCG 
GCATGGCCGC GCCCCAACCG GAGGTGGTGG GGCTGACGAC GACGACGAGG 
GCGACGGCGG CGTAGCGCGG TCGGTCGCTG TCGCTGCGGC GGAATTCCGG 
AGGAGGGGGG GCTCTGCCTT ATCGGATCGT GGGGGGTAAG ACCCGGTTCC 
GGCGATCGCC GGGATGGACA CCGACGGGCG CCTCCGCCGC GCGCTGGCGG 
CGTTCGGGGG CGGGGCCGAC GTGTGGGACC TCGTCGATGC CGCCCTCGCC 
TCGGCGGCGC GCGACCGCCC CGCAGAGCTC CGCGCGCGCC GCGACGGCAT 
CGTGGAGCGC CTCTACGCCA CCGCCGCCGG CGGCCGCTGC GGGAACTGCG 
ACGCGCCGAG ATCGGCCGAG CCCGAGGCGG CGGCGGCGGC GGCGGCTTCC 
CCGGCTTCGT CCGATGAGGA TGCCGACGTG GACGGCCTCG ACGACGACGA 
GGGCGGCGGC ATGGAGAGCA AGATCCTGGC GATCAGGGAC TTCTTGGAGG 
ACCCCGACCA GTCGGAGGAC GAGCTGGTCA GCTTGCTGCA GAGCCTCGCA 
GACATGGACA TCACCTACAA GGCTCTCCAG GAGACGGACA TCGGCCGCCA 
TGTCAACGGC CTGCGCAAGC ACCCGTCCGG CGAGGTCCGG CAGCTTGTGA 
AGCTGCTCGT CAGGAAATGG AAGGAGATAG TGGATGACTG GGTGCGGCTG 
CACAACTCCG GTGGCGACGG CGGTAGCTCG GTTCTAACTG ATGGTGACTC 
TCCTGATAAA ATCCAAGGCA GGAGCTACCA AAATGCTCAG GTTTCAGACT 
TCAAGTATTC TCCCAGCCCA CAGAGACATA ATGGTTTGAG TTCAGAGAGA 
TCTAGCAATA ATAATGGCGT CGAATCAATG ATTGAGAAGC GCAGAACAAG 
CCCAGCACCT ACATATCATA ACAACAAACA GAACAACAGC ATCGGCTATT 
CTACTACTTC CTCCTCTGCT CCAGTTAGGA CTGTAAGGGA GCAGAAAGAT 
AATCTTATGG ATCTTGAGAA GCTTGATTCT GCCAGAAAGA GACCCCAGGA 
AAACTACCAG GAAGCACAAA ATGCAAAAAA GCAGAGGACA ATTCAAGTGA 
TGGATATCCA CGACATACCA AAGCCGAAAA ATAGAAACGC CTTCATCCGC 
AAGGGCGGAG GCGGCCTCCC TGGAAAGCAC CGGTGATTAT CCTGCAGACC 
TACAATTGTA ATTTCAAAAA GGCCGAAACG AGAATAAAAG AAGAAGAATG 
AAGGCTTGAT ATTTGTTTTC TGGGTATTGT ACTATCGTTT TTACATTGCC 
TATTTGGTAC CCTAACGTAG CCTCACATCT TCCAGTTCAC TGTAATATTG 
TCCAGTTAGT ACATGAGGCT ATGCGTCTGG GTTCCCTTAC CAAGAAGAGG 
AGAGCAAAGT TTATAGACTT ACAGTGCTCG TTTCTATTGT AATTTCTTCT 
TCATTTTGAA TGTAGCTTGT TTACAATGTT GCTGCCGTTT TTCGATTAAT 
AGGTAGGTAT TGTATGTACT CATCAATTTG ACTGTATATT TGTTCGTTAC 
AAATTAAAGT GATATTAATA TATAACACAA TGGTATCACA TGG

Gene models with high sequence identity

AT5G09850.1 [+] show detail - Transcription elongation factor (TFIIS) family protein
E-value: 6e-53; Score: 205.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	2.2e-08
Gene3D	no description	2.6e-22
HMMPfam	Transcription factor IIS, N-terminal	9.8e-17
HMMPanther	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE	5.3e-06
HMMPanther	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE	5.3e-06
ProfileScan	Transcription factor IIS, N-terminal	24.629
superfamily	Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal	1.6e-16

See the detailed result >

AT5G09850.1

Model type: Protein coding
Short Description: Transcription elongation factor (TFIIS) family protein
Computational Description: Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR