K27637

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27637

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27637

Determination of introduced cDNA(s)

  • J013116M08 - Rice Full-length cDNAs - Original: J013116M08

    full reading [+] show sequence

    Nucleotide sequence: J013116M08 - full reading
    GTGAAGCTGG AGAGCTAGCA GAAACAAACC CCTCTCACTC CCAGATACCT 
    GCTGCTGCCA CTAGCCCACT ACCATGGATC CTTGCAAGTT CCGGCCGTCG
    AGCTCGTTCG ACACGAAGAC GACGACGACG AACGCGGGAG CTCCGGTGTG
    GAACGACAAC GAGGCGCTGA CAGTGGGGCC CAGGGGGCCG ATCCTCCTCG
    AGGACTACCA CCTGATCGAG AAGGTGGCGC ACTTCGCCCG GGAGCGCATC
    CCGGAGCGCG TGGTCCACGC CCGCGGCGCC TCCGCCAAGG GCTTCTTCGA
    GTGCACCCAC GACGTCACCG ACATCACCTG CGCCGACTTC CTCCGGTCCC
    CGGGCGCCCA GACCCCCGTC ATCGTCCGCT TCTCCACCGT CATCCACGAG
    CGCGGCAGCC CGGAGACGAT CCGCGACCCG CGCGGGTTCG CCGTCAAGTT
    CTACACCCGC GAGGGCAACT GGGACCTCCT CGGCAACAAC TTCCCCGTCT
    TCTTCATCCG CGACGGCATC AAGTTCCCCG ACGTCATCCA CGCCTTCAAG
    CCCAACCCGC GCTCCCATGT CCAGGAGTAC TGGAGGGTCT TCGACTTCTT
    GTCCCACCAC CCCGAGAGCC TCCACACCTT CTTCTTCCTC TTCGACGACG
    TCGGCATCCC CACCGATTAC CGCCACATGG ACGGCTTCGG CGTCAACACC
    TACACCTTCG TCACCCGCGA CGCCAAGGCC AGGTACGTCA AGTTCCACTG
    GAAGCCCACC TGCGGCGTCA GCTGCTTGAT GGACGACGAG GCCACGCTCG
    TCGGCGGCAA GAACCACAGC CACGCCACCC AGGACCTCTA CGACTCCATC
    GCCGCCGGCA ACTTCCCCGA GTGGAAGCTG TTCGTCCAGG TGATCGACCC
    GGAGGAGGAG GAGAGGTTCG ACTTCGACCC GCTGGATGAC ACCAAGACAT
    GGCCGGAGGA CGAGGTGCCG CTCCGGCCCG TGGGGCGCCT CGTTCTCAAC
    CGCAACGTCG ACAACTTCTT CAACGAGAAC GAGCAGCTGG CGTTCGGGCC
    GGGGCTGGTG GTGCCGGGGA TCTACTACTC CGACGACAAG ATGCTGCAGT
    GCAGGGTGTT CGCGTACGCC GACACGCAGC GCTACAGGCT GGGGCCAAAC
    TACCTGATGC TGCCGGTGAA CGCGCCCAAG TGCGCCCACC ACAACAACCA
    CTACGACGGC GCCATGAACT TCATGCACCG GGACGAGGAG GTGGACTACT
    ACCCATCGCG CCACGCGCCG CTCCGCCACG CGCCGCCGAC GCCCATCACG
    CCGCGCCCCG TGGTGGGGAG GAGGCAGAAG GCGACGATAC ACAAGCAGAA
    CGACTTCAAG CAGCCCGGGG AGAGGTACAG GTCGTGGGCG CCGGATAGAC
    AGGAGAGGTT CATCCGCCGC TTCGCCGGCG AGCTCGCGCA CCCCAAGGTC
    TCCCCTGAGC TCCGCGCCAT CTGGGTCAAC TACCTCTCCC AGTGTGATGA
    GTCGTTGGGG GTGAAGATTG CGAATAGGCT CAACGTGAAG CCAAGCATGT
    GAAGAAACTA AGGCACAAGA ATGCATCATC TCTTGTTAAT TAATTGGAGT
    ACTACCAACC AAATAAGGCC AGACAATGTC AGATGCACGC ATCTTCTGTT
    GTCGTTGGGC CATCTTTTGT ATGCATCCTA TTGTTAATTA CTAGTACATG
    ATATCCAAGT GATCATCAGC AAGGCTACAG AAATTCTGTA ATACGATAAA
    TTAAAAGAAA CCAAAATGGA GCCTGCATAT GTGTAACTTA ATTAATGTAC
    TGGCGTATTA ATGCCACTGC TGCATGTTGT AATACTCCAT CAAAGAGTCT
    ATTACTATTA AGTATTTAAA TTATC

    Gene models with high sequence identity

    1. AT4G35090.1 [+] show detail - catalase 2
      E-value: 0; Score: 762.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Catalase related subgroup 1.1e-180
    HMMPfam Catalase-related immune responsive 6e-20
    ProfileScan Catalase, N-terminal 74.711
    PatternScan Catalase 0
    PatternScan Catalase 0
    HMMPanther Catalase-like domain, haem-dependent 3.2e-266
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    superfamily Catalase-like domain, haem-dependent 4e-208
    Gene3D Catalase, N-terminal 8.4e-204

    See the detailed result >

    AT4G35090.1

    Model type
    Protein coding
    Short Description
    catalase 2
    Curator Summary
    Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).
    Computational Description
    catalase 2 (CAT2); FUNCTIONS IN: protein binding, catalase activity, cobalt ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 6114 Blast hits to 6094 proteins in 1849 species: Archae - 22; Bacteria - 4292; Metazoa - 675; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR