K27738

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27738

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27738

Determination of introduced cDNA(s)

  • J023065A19 - Rice Full-length cDNAs - Original: J023065A19

    full reading [+] show sequence

    Nucleotide sequence: J023065A19 - full reading 
    GCCAACCCTA CCACCACCAC CACCACCACC TCCACCTCCT CCCCCCTCGC 
    TGCCGGACGA CGAGCTCCTT CCCCCTCCCC CTCCGCCGCC GCCGCGCCGG 
    TAGAAGATGG CTGACGCCGA GGATATCCAG CCCCTCGTCT GCGATAATGG 
    AACTGGTATG GTCAAGGCTG GGTTCGCCGG AGATGATGCG CCCAGGGCTG 
    TCTTCCCCAG CATTGTCGGC CGCCCTCGCC ACACCGGTGT CATGGTCGGA 
    ATGGGCCAGA AGGACGCCTA CGTCGGCGAC GAGGCGCAGT CCAGGAGGGG 
    TATCTTGACC CTCAAGTACC CCATCGAGCA TGGTATCGTC AGCAACTGGG 
    ATGATATGGA GAAGATCTGG CATCACACCT TCTACAACGA GCTCCGTGTG 
    GCCCCGGAGG AGCACCCCGT CCTCCTCACC GAGGCTCCTC TCAACCCCAA 
    GGCCAATCGT GAGAAGATGA CCCAGATCAT GTTTGAGACC TTCAACACCC 
    CTGCTATGTA CGTCGCCATC CAGGCCGTCC TCTCTCTGTA TGCCAGTGGT 
    CGTACCACAG GTATTGTGTT GGACTCTGGT GATGGTGTCA GCCACACTGT 
    CCCCATCTAT GAAGGATATG CTCTCCCCCA TGCTATCCTT CGTCTCGACC 
    TTGCTGGGCG TGATCTCACT GATTACCTCA TGAAGATCCT GACGGAGCGT 
    GGTTACTCAT TCACCACAAC GGCCGAGCGG GAAATTGTGA GGGACATGAA 
    GGAGAAGCTT TCCTACATCG CCCTGGACTA TGACCAGGAA ATGGAGACTG 
    CCAAGACCAG CTCCTCCGTG GAGAAGAGCT ACGAGCTTCC TGATGGACAG 
    GTTATCACCA TTGGTGCTGA GCGTTTCCGC TGCCCTGAGG TCCTCTTCCA 
    GCCTTCCTTC ATAGGAATGG AAGCTGCGGG TATCCATGAG ACTACATACA 
    ACTCCATCAT GAAGTGCGAC GTGGATATTA GGAAGGATCT ATATGGCAAC 
    ATCGTTCTCA GTGGTGGTAC CACTATGTTC CCTGGCATTG CTGACAGGAT 
    GAGCAAGGAG ATCACTGCCT TGGCTCCTAG CAGCATGAAG ATCAAGGTGG 
    TCGCCCCTCC TGAAAGGAAG TACAGTGTCT GGATTGGAGG ATCCATCTTG 
    GCATCTCTCA GCACATTCCA GCAGATGTGG ATTGCCAAGG CTGAGTACGA 
    CGAGTCTGGC CCATCCATTG TGCACAGGAA ATGCTTCTAA TTCTTCGGAC 
    CCAAGAATGC TAAGCCAAGA GGAGCTGTTA TCGCCGTCCT CCTGCTTGTT 
    TCTCTCTTTT TGTTGCTGTT TCTTCATTAG CGTGGACAAA GTTTTCAACC 
    GGCCTATCTG TTATCATTTT CTTCTATTCA AAGACTGTAA TACCTATTGC 
    TACCTGTGGT TCTCACTTGT GATTTTGGAC ACATATGTTC GGTTTATTCA 
    AATTTAATCA GATGCCTGAT GAGGGTACCA GAAAAAATAC GTGTTCTGGT 
    TGTTTTTGAG TTGCGATTAT TCTATGAAAT GAATAACATC GAAGTT

    Gene models with high sequence identity

    1. AT3G12110.1 [+] show detail - actin-11
      E-value: 0; Score: 745.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.2e-65
    Gene3D no description 3.9e-36
    Gene3D no description 3.1e-09
    superfamily Actin-like ATPase domain 6.7e-99
    superfamily Actin-like ATPase domain 2.7e-67
    HMMSmart Actin/actin-like 1.1e-234
    HMMPfam Actin/actin-like 8.5e-159
    FPrintScan Actin/actin-like 5.6e-56
    FPrintScan Actin/actin-like 5.6e-56
    FPrintScan Actin/actin-like 5.6e-56
    FPrintScan Actin/actin-like 5.6e-56
    FPrintScan Actin/actin-like 5.6e-56
    FPrintScan Actin/actin-like 5.6e-56
    HMMPanther Actin/actin-like 1.1e-292
    PatternScan Actin, conserved site 0
    PatternScan Actin, conserved site 0
    PatternScan Actin/actin-like conserved site 0

    See the detailed result >

    AT3G12110.1

    Model type
    Protein coding
    Short Description
    actin-11
    Curator Summary
    Encodes an actin that is expressed predominantly during reproductive development.
    Computational Description
    actin-11 (ACT11); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cyclopentenone, actin cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15186 Blast hits to 14782 proteins in 3039 species: Archae - 6; Bacteria - 12; Metazoa - 5717; Fungi - 5233; Plants - 1598; Viruses - 2; Other Eukaryotes - 2618 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR