K27745

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27745

Determination of introduced cDNA(s)

J023117P18 - Rice Full-length cDNAs - Original: J023117P18

full reading [+] show sequence

TGATCCTACC CCCCGTTCTC TCCTCCCCAT CTCCAACGCA CGCACGCGCC 
ATCACCACCA CCTCGACGCC GGCGGCGACG ACCACGGCGA CGGCAACGGC 
GGCGGCGGCA GAGAAGCCCT CCTCATCCCC AAGATGGACA GCCATAACTC 
AGCACCTCCC CAGATTGCTG AAGTGAGAAT GGACATCTCA TCATCTACTT 
CTGTAGCAGC TGGGAACAAA GTTTGCAGAG GTGCTGCTTG TGACTTTTCT 
GATTCCAGTA ATAGCTCAAA AGATGCAAGG GAGAGAATGG CGTCAATGAG 
GAAGCTCATT ATTGCTGTGA TCCTTTGCAT CATATTCATG GCGGTCGAAG 
TGGTTGGAGG TATCAAAGCA AACAGTTTGG CAATCTTGAC TGATGCAGCC 
CATCTCCTTT CGGATGTTGC GGCCTTTGCC ATATCTTTGT TCTCTCTTTG 
GGCAGCTGGA TGGGAAGCTA CACCACAGCA GTCATATGGG TTTTTCCGTA 
TAGAAATTCT TGGTGCCCTG GTTTCTATTC AGCTCATATG GCTCCTTGCT 
GGTATTCTTG TCTATGAAGC TATTGTAAGG CTCATTAATG AAAGTGGTGA 
GGTCCAGGGC TCCCTCATGT TTGCTGTCTC AGCATTTGGC TTATTTGTTA 
ACATCATAAT GGCTGTCTTG CTTGGTCATG ACCATGGACA TGGACACGGA 
CATGGTCATG GGCATGGACA TTCCCATGAC CATGATCATG GTGGTTCTGA 
CCATGACCAT CACCACCATG AAGATCAAGA GCATGGCCAT GTACATCACC 
ACGAAGATGG CCATGGTAAT TCAATTACCG TCAATCTCCA TCACCATCCA 
GGCACTGGAC ACCACCACCA TGATGCTGAG GAACCATTGC TCAAGAGTGA 
TGCTGGTTGT GACAGCACCC AATCTGGTGC CAAGGATGCC AAGAAGGCTC 
GTCGTAATAT CAATGTACAC AGTGCTTATC TGCATGTGCT TGGGGATTCA 
ATCCAGAGCA TCGGTGTGAT GATTGGAGGG GCTATCATCT GGTACAAGCC 
CGAGTGGAAG ATTATTGATC TCATCTGCAC CCTCATCTTT TCCGTGATCG 
TACTCTTCAC CACAATCAAG ATGCTGCGCA ACATCCTTGA GGTCCTGATG 
GAGAGCACGC CCCGCGAGAT CGATGCCACC AGCCTTGAGA ATGGCCTCCG 
CGACATGGAC GGTGTGGTTG CAGTACATGA GCTGCACATC TGGGCCATAA 
CGGTGGGGAA GGTTCTCCTG GCGTGCCATG TGACAATCAC TCAGGACGCA 
GACGCTGATC AAATGCTGGA CAAGGTGATT GGGTACATCA AGTCTGAGTA 
CAACATCAGC CATGTGACCA TTCAGATTGA GCGCGAGTAG GCTTGACCGC 
TTGAGACAGG TAGGTAGTGT TGATGATAGA ACGGATCATC TTCATCTCAT 
CTCATGGGAC CAACTTATCA GGAACCTGTT TCACTGGTTT TATGCAGTTA 
CTGTTAGCTC TGCAGTGCAA ATCAGATCAG CAGAGTCCAA CAATTCCTGC 
AGGTTCATCT GAATGTTAGC TTCTGATGCT GTTTATTACT ATAAGTACGT 
GTTATTAGTA CTATCTTAGT CAATTAGGTG AGTTGATGTT AATCAGTTTC 
GTAGTCGGTT GTATTCACAT GGGTGCAGTT TTCAGACAAG TTTTCAGGCA 
CCTGTGAGTA CGTCAACCTG CCTTCTGCGT CTGTAGTCTA GCGCCCAGCC 
GTACTAGTTT TTATGTAAAT CTGCACTGGC ATGGGAAATA ATAACCAAGT 
TTCGTTTGGC CTT

Gene models with high sequence identity

AT2G46800.2 [+] show detail - zinc transporter of Arabidopsis thaliana
E-value: 1e-66; Score: 251.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Cation efflux protein	1.3e-87
HMMPanther	Cation efflux protein	3e-103
HMMPfam	Cation efflux protein	4.2e-63

See the detailed result >

AT2G46800.2

Model type: Protein coding
Short Description: zinc transporter of Arabidopsis thaliana
Curator Summary: Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.
Computational Description: zinc transporter of Arabidopsis thaliana (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: metal tolerance protein A2 (TAIR:AT3G58810.1); Has 17747 Blast hits to 10591 proteins in 2218 species: Archae - 164; Bacteria - 10632; Metazoa - 2900; Fungi - 834; Plants - 528; Viruses - 26; Other Eukaryotes - 2663 (source: NCBI BLink).
Link: InterPro Scan - TAIR