K27806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27806

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27806

Determination of introduced cDNA(s)

J033117K03 - Rice Full-length cDNAs - Original: J033117K03

full reading [+] show sequence

GGCCAGAGCA GCGGTTGTTG CTGTGCTTCT CCTCCGCGCT CCACATCACA 
TCGCATCACC ACCGCCGCGA CGAGCAGCGT GAGATCTCGG TGCCACCGAT 
CGAGTCGACG CAGAGGAGAG AGAGATCGGG GTTTGGTTTT TTGGAGGGGA 
GAGCGGAGTG TAGGAGGAGG AAGAAGCGGG TGATCGATTT TGCTTCGATG 
GTAAGGGAGA CGGGGTACTA CGACGTGCTG GGAGTGAGCC CGACGGCCAC 
CGAGGTGGAG ATCAAGAAGG CGTACTACAT GAAGGCGAGG AAAGTGCATC 
CGGACAAGAA CCCAAATGAT CCGCTCGCGG CGGCGAAGTT CCAGGAATTG 
GGAGAGGCAT ACCAAGTACT CAGTGACCCC ACACAACGTC AAGCGTATGA 
CTCATATGGG AACTCTGGTA TTTCAACGGA AGCAATAATT GATCCAGCAG 
CAATTTTTGC AATGCTGTTT GGTAGTGAGC TTTTTGAGGA TTACATTGGT 
CAATTGGCGA TGGCATCCAT GGCTTCACTT GATATATTTG GTGACGAAGA 
AGAGATTGAT GCAAGGATGT TGCAAGAGAA AATGCGAGTT GTACAAAAGG 
AAAGGGAGGA GAAACTTGCA GAGACACTGA AAAACAAATT GCACCTTTAT 
GTTCAAGGAA ACAAAGAGGA ATTTGTGCAG TTTGCAGAAG CTGAGGTGTC 
CAGACTTTCT AATGCAGCGT ATGGGGTTGA TATGCTGAGT ACTATTGGTT 
ATGTATATTC AAGACAAGCT GCGAAGGAGC TTGGAAAGAA AGCTATATAC 
CTGGGGGTTC CATTTATAGC TGAATGGTTC AGAAACAAAG GCCATTATAT 
TAAATCCCAA GTAACAGCTG CAACAGGTGC AATAGCTCTC ATGCAACTGC 
AGGAAGACTT AAAGAAGCAT CCTAGTGCTG AGTGCCACTA CACCGAAGAG 
GAACTTGAAG CTTACATGGA GACCCACAAA AGTGTTATGG TTGATTCCTT 
ATGGAAGCTT AATGTTGCTG ATATAGAGGG AACCCTATCA CATGTCTGTC 
AGATGGTGCT TCAAGATAGC ACTATCAGGA GAGAGGAACT AAGAGCTCGA 
GCTAAAGGAT TGAAAACTCT AGGCAAAATT TTCCAGCGTG TTAAGCTTGG 
TTCTAGTGAG GGGGAGGTCA CAACAATCAA CAATACAATA AATAATTCTG 
ATGACAATGA TGGTAGTTCT CCTGATTCAT CACCAATGTC CCCAAGGGAG 
CATCCATATG ATCCAAACCC ACCGTATTAC CAGAGCCCGT ATGTGGAGGC 
CCCTCAATTC GTCGGAGGTT ACCCTTCACT CAACTTTCCA ATGCCAACCG 
CTCCCCCCGG TGCACAGAGG GATCCAATCC CATGATCTAT ATGGGACGGA 
CGCGGTAGTA GCTTTGGTTC CAGAAAGGGT CATCATTTTG TACAATATTT 
TTCTTCCTCC TGGTAGATGG TTGGTCACAT AGGTCAAGAT GATTTGTGCT 
TATTAGTCGT AGTAGAGTGC TGGTTGTCCT ACTCCTCTGC ATGCTTTTTT 
TTTTCCCTTC AGTTTCAGTT GTGTTTGTGT CGTGTACAGG CAGGTGCGCG 
TGTTGTGCAA ATAGCGCTGC TGTTAAATCT GTAATGCTGT TGCTGAGGCG 
GCAACAGATC GGCATTTGTT GTACATGAAC AACAATCTCC ATATGTCTAT 
GGGTGCATAA CTGTTTTTGC CTATGGCCC

Gene models with high sequence identity

AT1G21080.1 [+] show detail - DNAJ heat shock N-terminal domain-containing protein
E-value: 1e-141; Score: 500.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Heat shock protein DnaJ, N-terminal	2.7e-29
FPrintScan	Heat shock protein DnaJ	1.7e-11
FPrintScan	Heat shock protein DnaJ	1.7e-11
HMMSmart	Heat shock protein DnaJ, N-terminal	1.7e-26
ProfileScan	Heat shock protein DnaJ, N-terminal	21.681
PatternScan	Heat shock protein DnaJ, conserved site	0
Coil	coiled-coil	0
HMMPanther	DNAJ-RELATED	7e-187
HMMPanther	Molecular chaperone, heat shock protein, Hsp40, DnaJ	7e-187
Gene3D	Heat shock protein DnaJ, N-terminal	1.6e-24
HMMPfam	Heat shock protein DnaJ, N-terminal	3.3e-25

See the detailed result >

AT1G21080.1

Model type: Protein coding
Short Description: DNAJ heat shock N-terminal domain-containing protein
Computational Description: DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169; Bacteria - 9211; Metazoa - 3964; Fungi - 2251; Plants - 2330; Viruses - 17; Other Eukaryotes - 4996 (source: NCBI BLink).
Link: InterPro Scan - TAIR