K28014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28014

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28014

Determination of introduced cDNA(s)

  • J013029F07 - Rice Full-length cDNAs - Original: J013029F07

    full reading [+] show sequence

    Nucleotide sequence: J013029F07 - full reading 
    GTAACTCCAA ATCCGCCATC GCATCCTTCT CTCCATCCAC CGAGGCGGCG 
    CCACCACCTC TCGTCCGGCG GCGGCGCGGC GCGACGCTCC ATCCCCGGCG 
    AAAAGGCCGC CGGATTCCCT GTGGGGGCGG CGGAGAGGCG TCGGAGGAGG 
    CTGGCGCCGG CGCGGCGACA AGCTTAATTA AGCAAATTGG ATTCGGATCA 
    CAAAGGAGGC GGTGCCTGTA GAAAAGCCAT GGCTTCTTCG GTGTTCAAGG 
    CGATGGCAGA GAAGGCAGGG CCGTCTGTCC GAAAGCAGGC CCTTACGCTG 
    ACCGATGCAG CGGCGTCGAG GGTGCGCCAG CTGCTTGGCG TACGGCAGCG 
    TGCTTATCTC CGTCTTGGCG TCAAGGCCCG TGGTTGCAAT GGGTTGTCGT 
    ACACAATGAA TTATGCTGAT GAGAAGGGAA AATTCGATGA ACTTGTGGAA 
    GATAAAGGAG TTAAGATACT AATTGATCCG AAAGCTCTTA TGCACGTGAT 
    TGGAACCAAA ATGGATTTCA TTGATGATCC ACTTAGGTCT GAGTTTGTGT 
    TTATGAACCC TAATTCCAAG GGAGAATGTG GTTGCGGCGA ATCATTTATG 
    ACATCAACCA AAAACAAAGG CCCGGCATAG TCCACCAAGT TTTGGCAGCG 
    ATTTGTTGAT TATTTGATGT ATAGAAGTAT GTTGCTAATT TGCTATACAC 
    TTCAGTGACC CATTGTAGAG GAAAATTTCA TTTCAGCTCC ATTGAGCTGA 
    TTATCCTTCG TCACTCAGCA TGGTTGGCAC TTGTTACCTT TCACCTCTGG 
    ATTGGATCAT CTGCAGCAAA GGAGGATACT GCCATTCCCC TCTAGCACGA 
    AACATCCAAT TGCAAGATGC CTCCTGATTG CATACTCTGG TGAGAACAAT 
    GGAGGTCAGC GTTCCAGCAA CTCGCCTGAG GGATCATATA ACAGGATTTT 
    CGGCATTCCA TCCACTCGCT AAGGGATCAT ATAACAGAGG TCTTGTTTAC 
    ATCTTGTAAG ATGGCATCCA AGGATAGATG TGGCATTGTT TTTTTTCCTC 
    TTTTGCACCA TGATCTGATA ATCACCTTGC TGCATGTTCA TACTGAGATT 
    TTGATCTCTC ATGTAACGGG ATTTTATGCC G

    Gene models with high sequence identity

    1. AT2G16710.1 [+] show detail - Iron-sulphur cluster biosynthesis family protein
      E-value: 3e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D FeS cluster biogenesis 1.5e-24
    superfamily FeS cluster biogenesis 1.8e-27
    HMMPfam FeS cluster biogenesis 1e-23
    PatternScan FeS cluster insertion, C-terminal, conserved site 0
    HMMTigr FeS cluster insertion 3.6e-51
    HMMPanther HES-B 9.7e-63
    HMMPanther FeS cluster biogenesis 9.7e-63

    See the detailed result >

    AT2G16710.1

    Model type
    Protein coding
    Short Description
    Iron-sulphur cluster biosynthesis family protein
    Computational Description
    Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: Iron-sulphur cluster biosynthesis family protein (TAIR:AT2G36260.1); Has 10065 Blast hits to 10064 proteins in 1822 species: Archae - 41; Bacteria - 5829; Metazoa - 243; Fungi - 173; Plants - 169; Viruses - 0; Other Eukaryotes - 3610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR