K28412

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28412

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K28412

Determination of introduced cDNA(s)

  • J023027L10 - Rice Full-length cDNAs - Original: J023027L10

    full reading [+] show sequence

    Nucleotide sequence: J023027L10 - full reading 
    GGCTCACACT AGGACTCTGT CCACAGGTTC CACGTTCCTG ATATGGTTCG 
    GCCCGACGCC GCGGCTGGCC ATCGCCGACC CGGAGCTGAT CCGGGAGGTG 
    CTCCTGGCGC GCGCCGACCG CTTCGACCGC TACGAGTCGC ACCCCATGGT 
    ACGGCAGCTC GACGTCTGCG GCGCTGACGG CGTCCCCTCT CGCGAGCAGC 
    TTGCCAAGCT CAAAACGCTC GGGATGATCC TGAACGAGAC GCTGCGGCTG 
    TACCCGCCGG CGGTGGCGAC GGTGCGGCGC GCCAAGGCGG ACGTGGAGCT 
    CGGCGGTTAC CTGCGGATCC CACGCGACAC GGAGCTGCTG ATCCCAATCA 
    TGGCCGTGCA CCACGACGCG CGGCTGTGGG GGCCCGACGC GGCGCAGTTC 
    AACCCGGCGC GGTTCGCCGG AGGCGTGGCC CGGGCGGCGA GGCACCCGGC 
    GGCGTTCATA CCGTTCGGCC TTGGGGCACG GATGTGCATC GGGCAGAACC 
    TCGCCATCCT GGAGGCGAAG CTGACCGTCG CCGTCATCCT GCATCGGTTC 
    GAGTTCCGGT TGTCGGCCAG ATACGTCCAC GCGCCGACGG TGCTGATGCT 
    CCTCCACCCG CAGTACGGGG CGCCCATCGT CTTCCGGCCC CGCTCATCAT 
    CCCAACCAAC CTGTGAAAAG ATGAACCCGC TAACCAGCAG CTAGCCGTGT 
    CAGTGTCAGG ATGTCGTTGC TCTCACACTC TCTCTATCCA TCCGAAGAGG 
    GAAGCAGAGA GATCGTAGGA CCAAGTTGTA GCGAGAGAAT GACTCACAAT 
    TAAAGAAACG AAGAAGAAGA AGCATCTTTT ACTGTACTAA CAATAATTAA 
    CCTGCCTGCA GACGATGAGG ATCCATGCAT CAGCAGCAGC AGCAGCAGCA 
    GCAGCTTAGA TTAGGATAGG AGTTTAGAGG CCTTGAGCTG GCTGTATGAC 
    TGTATCTCCC AATTTTTTTT TGTCTGCATT CTAGTTTGAT GATTTCTTCC 
    TTGGATTGGA GGGAGGGTTT TGGTGATCAG TTTGGTGTAT GAAATGAAAG 
    ATTGCAAAGT GT

    Gene models with high sequence identity

    1. AT2G26710.1 [+] show detail - Cytochrome P450 superfamily protein
      E-value: 6e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 1.8e-37
    PatternScan Cytochrome P450, conserved site 0
    FPrintScan Cytochrome P450, E-class, group IV 8.9e-09
    FPrintScan Cytochrome P450, E-class, group IV 8.9e-09
    FPrintScan Cytochrome P450, E-class, group IV 8.9e-09
    FPrintScan Cytochrome P450, C-terminal 9.8e-08
    FPrintScan Cytochrome P450, C-terminal 9.8e-08
    FPrintScan Cytochrome P450, C-terminal 9.8e-08
    HMMPanther CYTOCHROME P450, SUBFAMILY 72 2.5e-72
    HMMPanther Cytochrome P450 2.5e-72
    superfamily Cytochrome P450 1.5e-50
    superfamily Cytochrome P450 0.0022
    Gene3D Cytochrome P450 2.7e-45

    See the detailed result >

    AT2G26710.1

    Model type
    Protein coding
    Short Description
    Cytochrome P450 superfamily protein
    Curator Summary
    Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.
    Computational Description
    PHYB ACTIVATION TAGGED SUPPRESSOR 1 (BAS1); FUNCTIONS IN: steroid hydroxylase activity, oxygen binding; INVOLVED IN: response to light stimulus, response to brassinosteroid stimulus, brassinosteroid homeostasis, brassinosteroid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 72, subfamily A, polypeptide 8 (TAIR:AT3G14620.1); Has 34717 Blast hits to 34565 proteins in 1738 species: Archae - 71; Bacteria - 6148; Metazoa - 11470; Fungi - 6879; Plants - 8435; Viruses - 3; Other Eukaryotes - 1711 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR