K28511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28511

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K28511

Determination of introduced cDNA(s)

  • J013000O01 - Rice Full-length cDNAs - Original: J013000O01

    full reading [+] show sequence

    Nucleotide sequence: J013000O01 - full reading 
    GCCCCTGCAC CTGCGAACTC TCCACGCCTC CACAAATAAA GCTCGTCCCG 
    AGGAAGGGCG GCGACCCACC CCCCCCAATC GCCAAAACCC TAACTCCGAT 
    CCGATCGAGC TCTGCTTCCC ATGGCGACTG CCGCGAGCCA GGCGAGCCTC 
    CTGCTCCAGA AGCAGCTCAA AGATCTCGCG AAGAACCCCG TGGATGGGTT 
    CTCGGCGGGG CTTGTGGACG ATAGCAACGT GTTCGAGTGG CAGGTCACCA 
    TCATCGGCCC GCCCGATACC CTGTATGATG GAGGCTACTT CAATGCAATA 
    ATGACCTTCC CCCAGAATTA TCCGAATAGT CCCCCATCAG TAAGGTTTAC 
    CTCTGAGATG TGGCATCCAA ATGTTTATCC TGATGGGCGC GTATGCATTT 
    CTATCCTTCA TCCACCTGGC GAAGATCCCA ACGGTTATGA GCTTGCGAGC 
    GAACGTTGGA CACCTGTGCA TACAGTTGAA AGTATAGTTC TGAGCATCAT 
    TTCGATGCTC TCTAGTCCAA ATGATGAGTC TCCAGCAAAT ATTGAAGCGG 
    CTAAGGATTG GAGAGAAAAG AGGGACGATT TCAAGAAAAA GGTTAGACGC 
    ATTGTTCGTA AATCACAGGA AATGCTCTGA AAGATAAGGA GCACAAGGGG 
    GAGTAAGCGA GTGCTACAAC AGGTGCACTA CACTTAACTG TCTGTCGTCA 
    AACGACTACC TAAAGATAGC ATTTTTGCTT CTTCCCCTGT ATATTTCCCC 
    CTCAGTGTCA TTCGAGTGGT GATGTTGGTC TTGTCTCCGA GATGCTCGGA 
    AATGTTGCCT ATTCTAGAAA TTTCGATTGT ATTGTGTGGC ATGGAGTGTC 
    AACGTTGAGG AATATTTTGG AATGCTGCCA ATTAGTCATA ATTGTCGTAA 
    TGAACTTTTC AT

    Gene models with high sequence identity

    1. AT5G59300.1 [+] show detail - ubiquitin carrier protein 7
      E-value: 8e-70; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-conjugating enzyme/RWD-like 9.4e-64
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 G 3e-108
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3e-108
    HMMSmart Ubiquitin-conjugating enzyme, E2 2.6e-72
    ProfileScan Ubiquitin-conjugating enzyme, E2 41.967
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1e-58
    HMMPfam Ubiquitin-conjugating enzyme, E2 8e-52

    See the detailed result >

    AT5G59300.1

    Model type
    Protein coding
    Short Description
    ubiquitin carrier protein 7
    Curator Summary
    ubiquitin conjugating enzyme E2
    Computational Description
    ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR