K28630

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28630

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28630

Determination of introduced cDNA(s)

  • J023106K06 - Rice Full-length cDNAs - Original: J023106K06

    full reading [+] show sequence

    Nucleotide sequence: J023106K06 - full reading 
    GTAAGAGCGT GCGGGCTTCT TCTCCTAGCA TGAGTTGAGC CTCTTAATAA 
    TTTTCTCCGA AAAGGCGTGC TTTAATTTCC TCTGAGATTG AGCTCAGCAG 
    TACATCTCCA GGTTTTTCTT CTGCCAGCAG CCATGGGTTC AGGACTCTTC 
    AAGCCTCGTG TTCATCCGGA CCTCCGTGAT GTTTTCTCTA AGATGTCTTT 
    CTTTGACAAG ATTGGCTTTC TATTCATTCA TGCATTTGAC AAGAGAAACC 
    TGTGGCACAA GGTGCCTGTT CCGATCGGTT TGCTCTACCT GAACACCCGC 
    CGGACCCTGC TCGAAAAATA CAACCTGCTA GCTGTTGGGA GGAGTTCTCA 
    CGGTGCTCTG TTTGATCCCA AGGAGTTCCT GTACCGCACC GAGGATGGCA 
    AGTACAACGA CCCCCATAAT GCTGAGGCTG GTAGCCAAAA CACCTTTTTT 
    GGGAGAAACA TGGAGCCGGT TGATCAACAG GATGAGTTGA TGAGCCCAGA 
    TCCATTTGTT GTGGCGACAA AGCTGTTAGC CAGGAGAGAA TACAAGGACA 
    CAGGGAAACA GTTCAATATA CTAGCAGCTG CATGGATACA GTTCATGGTT 
    CATGACTGGA TGGATCATAT GGAGGATACC GGACAGATTG GAATCACAGC 
    TCCAAAAGAA GTGGCCAATG AGTGCCCACT CAAATCGTTC AAGTTCCACC 
    CCACAAAAGA ACTGCCTACG AATTCTGATG GAATAAAGAT TGGTCACTAC 
    AATATCCGCA CAGCTTGGTG GGATGGGAGT GCAGTATATG GTAATAATGA 
    GGAAAGGGCA GAAAAGCTCA GGACTTATGT TGATGGAAAA CTAGTGATCG 
    GAGATGACGG TCTTCTTTTG CATAAGGAGA ACGGTGTGGC ATTATCCGGC 
    GACATTCGCA ACAGTTGGGC TGGTGTTTCG ATCTTACAAG CTCTTTTTGT 
    TAAGGAACAC AATGCAGTTT GTGATGCAAT AAAGGAAGAA CATCCCAACC 
    TATCAGACGA AGAATTATAT CGGTATGCCA AATTGGTCAC TTCTGCTGTT 
    ATTGCAAAGG TTCACACTAT TGATTGGACT GTCGAGCTTC TCAAGACAAA 
    AACCATGAGA GCTGCAATGC GCGCAAATTG GTATGGATTA TTGGGTAAGA 
    AAATAAAAGA CACATTTGGT CACATAGGAG GACCGATATT AGGTGGGCTT 
    GTGGGACTGA AGAAGCCGAA CAACCATGGC GTACCTTATT CTTTGACTGA 
    AGAGTTTACC AGTGTTTACA GAATGCACTC CCTAATACCA AGCACTCTCA 
    AGCTCAGGGA TCCGACAGGG CAACCCGATG CAAATAATTC CCCACCATGC 
    CTGGGAGACA TCGATATTGG AGAGATGATT GGTCTCAAGG GGGAAGAACA 
    GCTATCAAAA ATAGGGTTTG AAAAACAAGC ATTATCAATG GGATATCAAG 
    CTTGTGGTGC ACTTGAACTA TGGAACTATC CAAGTTTCTT CAGGAACCTC 
    ATTCCACAAA ATTTGGATGG TACCAATCGA TCTGACAGAA TCGACCTTGC 
    TGCCCTAGAA GTATACCGAG ACAGGGAGAG AAGTGTACCA AGGTACAATG 
    AGTTCAGGAG GAGACTATTT CTGATTCCAA TAAAAAGCTG GGAGGATCTG 
    ACAAGTGACA AGGATGCAAT TGAAACCATA AGAGCAATAT ACGGAGATGA 
    TGTAGAGAAA TTGGATCTTC TTGTTGGTCT TATGGCAGAG AAAAAAATCA 
    AGGGATTTGC CATAAGCGAA ACAGCATTCA ACATTTTCAT TTTAATGGCA 
    TCAAGGAGGC TCGAAGCAGA TCGATTTTTT ACAAGCAATT TCAATGAGGA 
    AACATACACC AAGAAGGGGA TGCAATGGGT CAAAACAACA GAAGGCCTAC 
    GAGATGTGAT CAACCGGCAC TACCCTGAAA TCACTGCCAA GTGGATGAAG 
    TCCTCTAGTG CTTTCTCTGT GTGGGATGCA GACTACTAGT GCAAAAATTA 
    AAGGCCCCCT GCCATATTAT TTGGCGAGTT CTATGAAATA TTATTTGTTT 
    ACAGAATTAT GGTGTTTGTT CAGTGTAAAT ATAGTTAAAT ATGTCAGTGT 
    AATATATGTA ATAGGATTCA TCGCACGACA CAAGTTGTAT GCTCATTTGT 
    TTACAATTTA TTGCACATTA TTATTTGTTC ATTGTAATTA AATATGGCTG 
    GGAAAATAAG TAGGAGGAGA CCATATAACA TCTTCCTACA ATCTTCTGTT 
    TGATT

    Gene models with high sequence identity

    1. AT3G01420.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 790.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, animal 71.024
    HMMPanther FEEBLY-LIKE PROTEIN 0
    HMMPanther PROSTAGLANDIN G/H SYNTHASE 0
    superfamily Haem peroxidase 3.3e-124
    HMMPfam Haem peroxidase, animal 3.3e-127
    Gene3D Haem peroxidase, animal 2.8e-109

    See the detailed result >

    AT3G01420.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.
    Computational Description
    DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: alpha dioxygenase (TAIR:AT1G73680.1); Has 1465 Blast hits to 1381 proteins in 214 species: Archae - 0; Bacteria - 94; Metazoa - 1085; Fungi - 168; Plants - 70; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR