K28647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28647

Determination of introduced cDNA(s)

J033111N23 - Rice Full-length cDNAs - Original: J033111N23

full reading [+] show sequence

GACATCGTGT ACGCGTTGTT GGTGCCGGAG GCGTTCTTCC GCGACCCCGA 
CGGCCGCGAC GGCGTCGCCT CTCGCTCTCT CCGCCGCCCT CTCGCTATCT 
CCGCGGCCAC GCTGCTTTCT CTGCCCGGCG AGGGGCGGCG CTATGAAGCA 
CACGACGAAC GCGCGGTGGG CGCACATCGT GTGCGCGCTG CTGGTGCCAG 
AGGTGTTCTT CCGCGACCCC GACGACCACG ACGGCGTCGA CTGCTTGAGC 
TATCTCGCTC TCTTCGCTGC CCTCTGGCTC TCTCCGCCAG CGTCACCGCC 
ACGTCATCTT CACCGTTGTC GCCACCTCCC TCTATTCCGC CGGCTCTCCC 
TATTTCACCT CCGTTGCTGT CTCCTCTGGT GTCACCGTCG CCGCCGCCGC 
CGCTTGCCTC ATGTAGGTAG GTGCCGTCGC CTCACGATCC TTCACCAGTC 
GTCGCCACGA CGAGATCGTT CCTCCCTCCT ATTCAGCCGC CACATCTCCC 
AGCGAGGAGC TCGGGACCAC CAGGTCCGGC GACCCCGTCC TCCTTACAGG 
CGGATCCAGA AACCCGGATG AGGATGACAG CCGTTACCAC CCTTTTCTCC 
TCTTTCATCT TCACATGTTA GAGGATCCCT CTCCATCTTC CTCAGCTCGC 
TGGCATGGGA GTCGCACATG ATAAGGGGTT TCACGGGAGC CGGCAGCGAC 
CACTGCTTCT GTGAGAGGAC CGAAGAAAAA TATCCGTTGT TGAGAAGATT 
TAACACAGGG TCTTATTCCA AGAGATCGTT GCCAATGAGC GTGCTATTAA 
ATTGGAGTAC TCAAAGTAAG TTTAATAAGC CTCCAGTTTT ATTTTTTCCT 
ATCTATGCGT ATGATGTGGC AATGTTTCAT TTGGCCTAAA TAAAGAGAAG 
GTAGACAGTG ATCCAGTTGG ACATGGATAA TGGAAAATCA AGCTTAATTA 
GTTACAATCA CATAAGCTTA GCCAAAAAGT TGTGGTTATT TGATTGAATC 
AATTAATTGA CCAAACTAAG GCTTATAAGG AGCACACCAA CCACATATAC 
TATAACTTAA TTTTAGTACA GCAGGACCCA CAACTCACCT GTACCATACC 
ATTTAGATAT GTCGGTTATC CTAAATATAA AATGTATCCT AAATATAAAA 
TGAGGTCTTA ATTCCTTTAT TATGTGCAAC AGCTATTTGA TTCAACAATG 
CTTCCATTTG ATCACAACCA ATTGAAGTAG CTTATGTGGA TATTTCCTAT 
GGCACAGAAT CCTAATGTTA GTGTTTGAAG AGGAAAAAAC CAATTTAACT 
CTTTACCTAC CGAAATTAGT AAAGGCAACT GGTATGGTCA CTCTACAAAA 
AGTCAGTCCG TTTTATTGCA TTTCACAATT CAACTACACC TAAAATAGCT 
GAGCCAACCA TTTACATAGT TACCCATCCA TATTATCGAT TAATGTTAGA 
TTTAGTTGAT TTCAACTTAC AAAGGATGAA TTTATCATTT GGTAATAATT 
AGTTCTTGGG CGAAGTTCCC AAACAACCGG TGTAATCGGG TTCTATTCTT 
TCCTGTTCAC GTTCTCATAA GGTGGTTACA CCATTATGCC ATGTTATGCC 
TCCATGCTAT GCATCTTCCT GGTACGTGGA TCAACTAAAA CAACTATTGG 
TTCCTACATT TGATTTAATC TTTGTATAAA TAGCTTGATT TGCATATCCA 
ATGGGTTTTT TGTTGGATGT TAACTTGCAC AAAAGAAAAA TTATATTTAT 
TCACTGACTG ACTGGTTGCT CTGTTGAGTT CCCTATCTTT TGTTGACTAT 
ATTGCTAACT GGTGCCTTTT TAGTAGGTCT ATATTTTCTT TGCTTACACA 
GTAAACCCTG CACCGCACTT ATCTATCCCT TCTTCCTATT GACAATATCC 
TTGATCTAAT TGGGGTTGTC GATGATATAT TTGTGTACTG AATGGTATGG 
CAGATCATGC TTTGATAAAT GATGCTGGCA CAATGAAAAG GATAATAGAG 
CTAAACCTTT TGGTTCTTAC GGTGCCCTGG TCATGGCTAA ATAAGGGAGT 
TGGACACACA TGTTCATTCT GCCTATTCTA ACACCAATGT AATTGGAAAT 
CGACTTTGAT TTAATACATC TATGTGC

Gene models with high sequence identity

AT3G14740.2 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
E-value: 8e-11; Score: 66.20

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PTHR13793:SF23	5.79999653854781e-13
HMMPanther	PTHR13793	5.79999653854781e-13

See the detailed result >

AT3G14740.2

Model type: Protein coding
Short Description: RING/FYVE/PHD zinc finger superfamily protein
Computational Description: RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR