K28749

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28749

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28749

Determination of introduced cDNA(s)

  • J033119C19 - Rice Full-length cDNAs - Original: J033119C19

    full reading [+] show sequence

    Nucleotide sequence: J033119C19 - full reading 
    TTTTTTTATT CGGAATCATT TGCATGAATA TGACAGTGTG TTGCCATGCT 
    TTTTGCGTTC GAACAAACAA GGGGACATAC TGAATAAATA GACTAACGTG 
    TAGACATATG GTTGATAAAT TGCGAGTGCC GTATAAGATT GAATAAGTAG 
    ATAGACTTAG GTGAGATAAT GGTAATGTCA TATAAATTAT TAATTGTAGA 
    ACCCACTTAA GTGAGCAGGT GATATCTCAA CTCTTTCTTA ATATTATTTT 
    CCTTGAAAAT GCACAAGAGG AACTTCATGG GACTAAAATT TCCAATTCCA 
    AGGCAAATGG ATGGAGTAGT TTGTAAGGGT TACTAGGGTT AAATGGCCAT 
    GCAACTCGCT ATATACTAGT TTCTTTAGTC TTTACTCCAA TTTATGTCCA 
    CTGATTGTAA TTTTATTTAT GTGAAGTATA ATATTAATTC ATTAGGAGAT 
    CTATTTTCAT CCATGAATTA GTACTGGCTA GATTAGACAC TAAGCATACT 
    ATTTGTGTTT GCTCCATTTT GAACAGTCCT TATGTTTTTT CTTTTCGCAG 
    CTTTCGAATC AAGAATATGG TTTTTTTTTT TTACTGTGCG AGTATCAATC 
    TGCAGTTACT GCAGTCCACT AATGGAGTAA ACGATGCTAC TCCAATCCTC 
    TCAAGCTTAG CATTTCTTCG AGAAGCTTAG CAATTTGCTT TTACATGATT 
    TGTTGAATGA ATTACTATCT ACTTGTGCTG TTATAGTTCT GCAAATGCTT 
    ATGCTTGGTG CAGGTTACAT CACCATATGG GAACACCTTA CATCACAATG 
    AAAATGCTAC GGTTGGTCAG TTCGCATTCA CAACTTCAGA AGCAGGAAAC 
    TATCTTGCAT GCTTCTGGAT AGATAGCGCA GAGAAAGGGT CAGGAATATC 
    TATTAATCTT GATTGGAAGA TTGGAATTGC AGCAAAGGAT TGGGATGTTA 
    TCGCTAAGAA GGAAAAAATT GAGGTAGGAG TAGGCTTAGC CAAACTGCTG 
    ACGGTCCATA TGACCATATT TCACTGATGT CCAGTTTAAT TCACTGCTTC 
    TCTAATTGCT GCAATCTAAT TCCTTTTGTA GGGTGTAGAA CTAGAGCTTA 
    GAAAACTTGA AGTGGCAGTA CAATCCATCC ATCAGAACAT GATATATCTC 
    AAAGCAAGGG AAGCAGAGAT GCGAACAGTG AGCGAGAAAA CAAACGCTAG 
    GGTAGCCTGG TTCAGTATTT TGTCACTAAG CGTCTGCATT GTGGTTTCAA 
    TTTTGCAATT GTGGCACCTT CAAGGGTACT TCCAGAAGAA GAAGCTCATC 
    TAGGTTAGCT CGCTTGAGCT GTACCGTGAC TCCAAAATTG CAAATGTTGT 
    TACATTGGGG AAAACAGTTT TGTCATGTTA GTTCGAACTT CACGCTAGCG 
    AGGAGCTGCT TGTACTTTAT GTAATTTAAC CATGGTTCAG TTTAGATGTG 
    TTGTGCATTA TGATTGCAAA TAGGTGATAA CTTAAATCTC CCTGGAATAT 
    TTGATGCCTT CAGGACATAG ATTAC

    Gene models with high sequence identity

    1. AT1G09580.1 [+] show detail - emp24/gp25L/p24 family/GOLD family protein
      E-value: 3e-41; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan GOLD 9.876
    HMMPfam emp24/gp25L/p24 2e-14
    HMMPfam emp24/gp25L/p24 8.3e-23
    HMMPanther EMP24/GP25L-RELATED 8.8e-40
    HMMPanther COPII-COATED VESICLE MEMBRANE PROTEIN 8.8e-40
    HMMPanther EMP24/GP25L-RELATED 1.5e-44
    HMMPanther COPII-COATED VESICLE MEMBRANE PROTEIN 1.5e-44

    See the detailed result >

    AT1G09580.1

    Model type
    Protein coding
    Short Description
    emp24/gp25L/p24 family/GOLD family protein
    Computational Description
    emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1); Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 509; Plants - 239; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR