K28847

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28847

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28847

Determination of introduced cDNA(s)

  • J023080N07 - Rice Full-length cDNAs - Original: J023080N07

    full reading [+] show sequence

    Nucleotide sequence: J023080N07 - full reading 
    GATCGGAGCT AGAGTCCCAG CTCTCGCAGC TGCAAGACGA GCTCAAGAAA 
    GCCAAGGAGC AGCTGCTCTC CACCGAGCAC TCCAAGCGGC GCGCCCTGCA 
    GGAGGCCGAG GACGCCAGGG CGCAGGCGGC GGCGGCGTCC GCGCAGGTCA 
    GGGACTCCGA GGCGCAGCTC GCCGAGCTCT CCTCCGCCGA GGAGAGCCGC 
    CTCCTCGAGC TTCGCCGGCT GTCCCAGGAG CGCGACCGCT CGTGGCAGTC 
    GGAGCTCGAG GCCATGCAGA AGCAGCACGC CGCCGACTCG GCCGCGCTCG 
    TCGCGGCCAT GGGCGAGGTG CACCGCCTCC GCGTGCAGCT GGCCGCGGCG 
    GCGCGCGCCG ACCGCAAGCA GGACGTGGTG GAGGCGATGG CCACCATCGA 
    CGAGCTCAGG GTGAAGCTCA AGGCGAGCGA GGAGGCCGAG GCGCAGGCGC 
    GCGCCTTGCA CGAGGAGTGC AAGCAGCAGC TGGAGACGAG CCGTGCCACC 
    ATCGACTCGC TGCTCACGGA CGGCTCCAAG CTCATGGACT CCTTCAGCCT 
    CGTGGTCAAG GAGCTCGAGG AGTCACGAGC CAAGGTGAAG GCACTCGAGG 
    AGGAGATCGC GGAGACGTCG GCGGCAAAGG CCGGCGAGCG TTGCAACTGC 
    TCGGCGTCGG CGTCGGCATC GGAGGTCGCT GAGCTGAGGT CGGAATTGGA 
    GTCCACGGAG GCCAGGTTCC AAGAAGAGCG CATCCTGAGC ACAGTGGAGA 
    CGCAGTGCGC CTACGAGCTC ATGGACCAGA TAAAAATGGA GTCCGACTCG 
    CGGCACGGCA AGCTCGCCGC GGCGCTCGAG AGCACCAAGT CCGAGGTCAT 
    CTTCCTCAAG GCGAGCCTCT TCGACAAGGA CTCCGAGCTG CGGCGCGCCC 
    TGGACGCGAA CGAGAAGCTC CAATCCGAGA CGAGAACGGA CAACGAGCTG 
    AAGGAGCAGC TGCAGGGCGC GCTCCTGGAG AACGGGCAGC TGAAGCGCGA 
    GCTGCAGCAG CACACCTCCG AGAAGAAGGC CTCGGCGAAG GCGACGGACG 
    CCGCCGACGC GGCGGCGGAG GCGGCGAAGA AGGGGGAGAT GGAGGCCGAG 
    CTGAGGCGTC TGCGGGTGCA GGCCGAGCAG TGGAGGAAGG CCGCCGAGAC 
    CGCCATGGCG CTGCTCACGG TGGGCAAGGG CGGCAACGGG AAGGTGGTGG 
    ACCGGAGCGA GTCGCTTGAA GGAGGCGGCG GCGGCGGCGG CAAGTACGCC 
    GGCCTGTGGG ACGAGCTCGA CGACGACGCG GCGGCCAGGA AGAACGGCAA 
    CGTGCTCAGG CGGATCAGCG GCATGTGGAA GAAATGAGGC TGATCAGAAT 
    CAAACTGCGC GCGCTATGCG CTAGGGAATT TGCTCATCTT TTCCCGTGTT 
    GTAGTAAATT CTTTTTGCCG GTTGCTTTGG TACAAAAGGA AAAAGGAGAA 
    AAACATAGGA GTGTGCTTGT ACTGGTTGGG GGTAAACGTG CTCATAGCTG 
    TATCATACGT GGTATATGAA GGGTTAATTC ATCCGGGCGT GACAGATTGG 
    ATTAGGCTTT TTGTTAGTTT TCGTCAGTTC TGATTCTCTC AGATTCACCG 
    ATGAGAGCTG TTTGTATGTA ACCTTTTGTT CTTCAATCGG CGTGATTCAA 
    ACATTTCGGC CCATTTCTCA GTCCTGGGCC CTTTTCTGTC TTGGGCCAGC 
    CC

    Gene models with high sequence identity

    1. AT2G37080.1 [+] show detail - ROP interactive partner 3
      E-value: 2e-34; Score: 144.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT2G37080.1

    Model type
    Protein coding
    Short Description
    ROP interactive partner 3
    Computational Description
    ROP interactive partner 3 (RIP3); LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 4 (TAIR:AT3G53350.1); Has 147635 Blast hits to 77239 proteins in 3391 species: Archae - 1987; Bacteria - 30902; Metazoa - 62424; Fungi - 12574; Plants - 8109; Viruses - 683; Other Eukaryotes - 30956 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR