K28951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28951

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28951

Determination of introduced cDNA(s)

  • J033107M16 - Rice Full-length cDNAs - Original: J033107M16

    full reading [+] show sequence

    Nucleotide sequence: J033107M16 - full reading 
    GACGTAGCCC CGGAGGAAGA AGACTCTCGG TCAAGAGTCA AGACTTCGAC 
    CAATCGACCA ACACGAAGCG GCAAAGGAAA CGTCACCGTC GCGGCGTCGC 
    CGATGGAGTC GTCCGCCTCC TCCTCGGCCG CGGTGGCGGC GGAGGGGGCG 
    CCGGCGACGG GGGAGCAGCT GGCGGTGTTC TGGCACGAGG GCATGGTGGC 
    CCACGACGCC GGCCGCGGCG TGTTCGACTC GGGCCGCGAC CCGGGCTTCC 
    TCGACGTGCT CGACCAGCAC CCGGAGAACG CCGACCGCGT CCGCAACATG 
    GTCTCCATCC TCCGCCGCGG CCCCATCGCG CGCTTCATCT CCTGGCACTC 
    CGGCCGCCCC GCCCACGCCG CCGAGCTCCT CTCCTTCCAC TCCGCCGAAT 
    ACATAGAGGA GCTCGTGCAA GCAAATGCCG TTGGTGCCAA GAAGCTGTGT 
    GAAGGCACTT TCTTGAACCC TGGATCCTGG GGTGCTGCGC TTCTGGCGGC 
    TGGAACAACT TTATCAGCGA TGAAGCACAT ACTAGATGGA CATGCCAAGA 
    TTGCCTATGC GTTGGTCCGC CCCCCTGGCC ATCATGCGCA ACCGGACCGT 
    GCTGATGGTT ACTGCTTCCT GAACAATGCT GGGCTTGCAG TGAAGCTGGC 
    TCTGGATTCA GGACGCAGAA AGGTTGCTGT TGTTGATATT GACGTGCACT 
    ATGGAAATGG CACTGCGGAG GGCTTCTACC ACACAGACAG CGTGCTGACG 
    ATCTCTCTTC ACATGAAGCA TGGTTCATGG GGTCCATCAC ATCCCCAGAG 
    TGGCTCGGTG GATGAGATTG GTGAAGGCAG GGGTCTTGGG TACAATCTCA 
    ATATTCCTTT GCCTAATGGC AGTGGGGATG CAGGGTATGA GTATGCGATG 
    AATGAATTAG TTGTTCCAGC CATAGAGAAG TTTCGTCCTG AGCTTTTGGT 
    TTTTGTTGTT GGCCAAGATT CTAGTACGTT TGATCCCAAT GGAAGACAGT 
    GCTTAACCAT GGATGGTTAT CGGAAAATTG GGCAAATAAT GAGAGGCATG 
    GCTGATCAAC ACAGCAATGG TCAAATATTG ATCGTGCAGG AAGGGGGTTA 
    TCACATCAGC TATTCGGCAT ATTGTCTGCA TGCAACACTA GAAGGTGTTC 
    TGAATCTACA AGCCCCGTTG CTTGATGATC CAATCGCCTA TTATCCAGAG 
    GATGAGAAAT ACACCATGAA AGTTGTGGAC ATCATGAAGA AATGCTGGAA 
    AGAATCTATT CCATTCTTGA AGGACATATA GAAATCCATT TCTTTTAGAT 
    GCGAGTGCCC TTGAACCTCA ATTTCATATC AGTGCACCGT CTATTCTTAT 
    GGCCTTTTGA CTGAAAGTAC ATGCATTCAT TGGAGCAACA TTCGAGTGCT 
    TGTTCCTTTC ATAAACCCCT GATTCACAAG TTCTCAATTC ACATTGATGG 
    GCTGTTTGAT TATGCAATGG GGCATTGGGG CTACAGCCAC CTGTATTATA 
    TAAGCGCACC AGTTCCAAGT CTGAAACCAA GTGCCAAGTC TGAATTATTG 
    TCTAGCAAGG AATGCTACCT GCTGCCACAT CACTCGTCAA CTTACTGCCT 
    ACAGCAATAC TGGAAGGAAT ATATGTGGGC GATGATAAGG TGATCCATTT 
    TACTAGAGGA AGGGGCCAGG AGGTCGGAAC AGGAACTTTC ATTGACCTCC 
    TCCTTATGAG CTCTGGTCCT AATACAAACA CTCCATGTTC AATATGCAAC 
    AATGAAGGTG CCACCACCAA TACGGAGACA AATGGTGTGG TATCCTCTTG 
    CCTCAACTGC TTCCTGTCAG GGGGCGCCCT CTACCGTTTC GAGTATGCTG 
    TCAACCCAGC ACTTTTCCTT GCCAAAGCGC GAGGAGGGAC GTGCACGCTT 
    GCCCCAACTG ATCCAGATGA GGTTGTTGTG CGCCGTGCCA ATCACTTGCT 
    CAGCAATGGT TTCAGGTGCT ACAACCTGTT CAAGAGCAAC TGTGAGGACT 
    TCGCGATATA CTGCAAGACA GGCCTCCTTG TGGCAGAGCA AGGTGTCGTC 
    GGGCAGAGTG GGCAGGCCAT CTCCATCATC GGTGGACCTC TTGCTGCGGT 
    GATTTCAACC CCATTCCGCC TAGTAACCAC GAATATCTAT GGAATGGCGG 
    TGATGGCAGT TGGGGTGTAT TGCGCCAGCA GGTACGCAGC TGACATTGGC 
    AACCGGCGAG ATGTGCTGAA AGTGGAAGTG GAGGACCTGA CTGCTGGGCT 
    GGCGAGTGGC AGGATTCGTG CCGTGGAGAA CATCAGTCAG TTGGTTGCTC 
    CGGCAGAAGC CCAAGGTCTG GCCGTAACCG CACCTGTTGC TGCTTAAAGT 
    GCACCACTGA GATCTATACA TTACTCCAGA CCTTCTGCTG CTAAATTTAT 
    GGATGTTTCG TTGTCAAATA TCAGCTGAAA TTGTGTACCA GAGTGAGCCT 
    CCCATTCAGC AATAGCTGTA CAAACAATGA AAAAACTTAT ACGCCCGTTT 
    CTGCCATCAA CTGTTATGTG TGGCTTATCT ACTGTTGTAT AAATTATGAA 
    CATGGAAGTG TGGTGCTTGT CGATTTGCAA CTCAAGATTG TGACAGCTCT 
    CTTATTTTAG GCAGTAATTC CACTTCATTA GGAGACGTTT GCTTGTAAGT 
    GGGAAATATA ATTCACCTGA CCTGAGCCAA CTTGGGATGT AGAGGTTAAC 
    TTTCATTCAT GGCCTCATTG GGAGTTGTTG GGACACGGAA AAACTGCAAT 
    TTTGTTTGAG AATTCATATA ACAGCAAAGC TCATAAGCCA TTTTTTCACT 
    CG

    Gene models with high sequence identity

    1. AT1G08460.1 [+] show detail - histone deacetylase 8
      E-value: 5e-146; Score: 515.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone deacetylase superfamily 4.2e-87
    HMMPfam Histone deacetylase superfamily 4.7e-79
    HMMPfam NC 4.8e-19
    superfamily Arginase/deacetylase 2.1e-95
    FPrintScan Histone deacetylase superfamily 1.7e-12
    FPrintScan Histone deacetylase superfamily 1.7e-12
    FPrintScan Histone deacetylase superfamily 1.7e-12
    HMMPanther HISTONE DEACETYLASE-RELATED 3.5e-162
    HMMPanther Histone deacetylase superfamily 3.5e-162

    See the detailed result >

    AT1G08460.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 8
    Computational Description
    histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR