K29036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29036

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29036

Determination of introduced cDNA(s)

  • J013140N04 - Rice Full-length cDNAs - Original: J013140N04

    full reading [+] show sequence

    Nucleotide sequence: J013140N04 - full reading 
    GACTCTCTCC GCCCTCCTAA ACCCTACGAC CATGCCGACC CTCGCCGCCG 
    CCGCCGCCGC CGCCCGCCGC GCCGGCGGGG CACTGCGATA CGCCGTGCTG 
    GGCGGGGTTC GGTCGCTCTC ATCCCTCCAG CCGTCATCCT CCTCCTCCGC 
    CGCAGCCGCC GCCAGCGAGG AGGTGCTGGT GGAAGGCAAG GCCAGCGCGC 
    GCGCCGCCGT GCTCAACCGC CCCGGCCATC TCAACGCGCT CACGACCACC 
    ATGGGAGCTA GGCTCAATAA GTTTTATATG TCATGGGAGG ACAACCCTGA 
    TATTGGCTTT GTCATGATGA AGGGCAGCGG CCGAGCATTC TGTGCTGGTG 
    GGGATGTTGT TAGGTTGCAC CAGCTTATAA GTGAAGGAAA GTTGGACGAG 
    TGTAAGGATT TCTTCAAGAC TTTGTACAGT TTTATTTATG TTCTGGGCAC 
    ATACTTGAAG CCACATGTTG CCATTCTTGA TGGTGTTACC ATGGGTGGAG 
    GTGGAGGTGT TTCCATTCCC GGAACATTTC GCATTGTCAC TGATAGAACG 
    GTATTTGCAA CTCCAGAAGT ACATATTGGC TTCCATCCTG ATGCTGCTGC 
    CTCCTTTTAT TTGTCCCATC TGACTGGTCA TGTTGGTGAA TATTTGGCCT 
    TGACTGGTGA AAAACTCAAT GGAGTGGATA TGATCGCACT TGGCCTTGCT 
    ACACACTATT CCATGAGTGA TCGGTTGAAT CTGGTTGATG AACGCCTTGC 
    AACATTGTTA ACTGATGATC CATCAGTTAT TGATACTTCC CTTACACATT 
    ATGGAGATCT TGTGTATCCA GATAAGAGTA GCATTGTTCA TAGGCTGGAG 
    GTTATAGATA AATGTTTCAG CCTTGAAACA GTCGAGGAGA TTGTGGATGC 
    CATGGAAATT GAAGCAGCTA GGTTAAATGA AGATTGGTCT ACCTTGGCCC 
    TGAAACGGTT GAAAGAGGCT TCTCCTCTTG CGTTGAAAGT TTCACTGCGA 
    TCGATACGTG AAGGTAGATA CCAGACACTT GATGAATGCC TTGTGCGTGA 
    ATACCGCATG TCTATCAATG GAATCTCAGA GAAATTTTCT CATGAATTTC 
    GTGAGGGTGT CAGAGCACGT CTTGTGGAGA AGGACCTAGC TCCAAAGTGG 
    GATCCACCTG CCCTTGAGTA TGTATCAGCG GACATGGTCG ATTCTTACTT 
    TGCTCCCCTG GGTGAATTTG AGCCTGAGTT GACACTGCCT ACTGAATCGC 
    GAGAGGCATT TGTATGATGA CTCTGCATGA CAATTCCAAG TAGCGCTTTT 
    GTTTGAAGCC TTATAGATTT TTGAGCCCAC ACTGTCGACC GTTGGCAGCA 
    CATAATAACA GATAGGATTC TCAATCTATT CTTGTACCAT ATATGCCTTG 
    GTGTATTGAA AGGAACTGAT CTCCAAGGTG AACTCCTACC ATTCTCACTT 
    TCATAAATTA ATGCCTTCGC TTCATTTCAT TTATACT

    Gene models with high sequence identity

    1. AT4G31810.1 [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
      E-value: 5e-131; Score: 464.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.5e-36
    superfamily ClpP/crotonase 5.2e-54
    HMMPanther ENOYL-COA HYDRATASE-RELATED 6.7e-82
    Coil coiled-coil 0
    HMMPfam Crotonase, core 2.7e-20

    See the detailed result >

    AT4G31810.1

    Model type
    Protein coding
    Short Description
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Computational Description
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT3G60510.1); Has 22679 Blast hits to 22670 proteins in 1880 species: Archae - 357; Bacteria - 15693; Metazoa - 1078; Fungi - 640; Plants - 575; Viruses - 0; Other Eukaryotes - 4336 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR