K29422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29422

Determination of introduced cDNA(s)

  • J033070O18 - Rice Full-length cDNAs - Original: J033070O18

    full reading [+] show sequence

    Nucleotide sequence: J033070O18 - full reading
    GGATCCGAAT CCAAACCCTC CTCCAAGCCC TAATCCAATC CACCCAACGG 
    TCTCCTCCTC CTCCCCTCTC CGCTTCCCCC CCGAAACCCT AAACCCCCAC
    CTCCTCCCCC CACCCGCGGT TTCCCGCCCG ATCCCCACCG CCGCGCGCTC
    AATCCGGGTT CGAATTCGAA TCCCAGCTCG AGGCGCCCGC TCGATTCGAC
    CCCCGCGGCT ACTGCTGCTG CTGCTGCCTC GAGGCCTCCA GCTCAGCCGG
    CTTGGCGCGG ATGGTGGCGT CCCCGGCGGC GTCGAGACCT AGGCCGAGCC
    CTAGCTCCGG ATCTGGGAGG AGGAACCCCG CCACGCCCGC GAGGTGTTCG
    ACGGAATGAG CGGTCGGGTT GGGGGTGGAG GAGGAGAGGA GGCGGCGGAA
    GCATGAGCGG GGGCGGAGGG GGAGGAGGCG GGAGCGGGAG CGGGAGTGGG
    AGCCGGGACG AGTACGGTAG GGCGGTGGCG CGGGCGGCCG TGGCGCAGGC
    GCTGGAGGCG GCCGGGTTCG ACTGCGCGCA CCGCTCGGCG GTGGACGCGC
    TCGTCGACGT CATCCTCCGC TACGTCGTGC ACCTCGGCAG GACCGCGGCG
    TTCAACGCCA ACCTCGCCGG CCGCGTCCTC GCCAACGAGT ACGACATCAT
    ACAGGCGCTC GAGGAGATCG GCACCGATTT CGATGGGTTC GTCGGCGCGG
    CCACCTCCGA CCGCTGCCTT GTCGGCTCGG GCGTCGTCAG GGAGCTGATT
    GATTACGTTG AGTCCAAGCC CGAGGTGCCG TTCGTGCGGC CTCTGCCTAG
    CTTCCCGGTG CCGCGCGTGG AGCCGCAGCC AGCTCAAAGC TTCGCGATGG
    CCGGGAAGGA GTCTGGGATG AAGCATGTGC CGGAATGGCT CCCGGTGTTC
    CCGGATCCAC ACACGTACAT AAGGACAGAG GTTTGGAGCG AAGAGGAGGC
    CAAGGCCAGG GTGGACAAGG TTGAGCAGGT GCGGCAGCGG AGGAAGGCTG
    AGAAGTCACT GCTCAGCTTG CAGCGGCGGT TGGCACTTGC AGGTGCTGAT
    GGATTTAGGC CAGCGGTTAC AGAGAATACT GCGGAAAAGG GGAAGGAGAT
    ACAGGTGGCT GGGAGCAAGA GAAATCCATT CCTTGAGCCT GCATTGCCAC
    CTGGGGAGAA GGAGGTGTCT GATGTTGCTA TGCAACCACA GAGGAGGAAA
    ATCTCTGTCC TCGACGCATT TGCACCAGCG ATTCAGGCTG CAAACATGAT
    GGACATTGAT ACTGGGCCAG GTTGGGACAA CAATCAGAAT CAGAAGAGCA
    TTGTTCCCAA AGAGAGGGCA CCGGTGCACC TCAAGATTGG AATTGATAAG
    AAGCCGTTAT CAGCTGTGTT GAATTCAAAA CCCCTGGATC TGAGGGAGGA
    TCCGTCTTTC TTGAAGGAGG AAGTAAAGGA TGAGCGGAAG CGGAGGGCGG
    GCATGATACT AAGGGCATCA ATGGAGAACC CACAGGAGCT TCCGCAGCTT
    TAATGCTGCA TAATGTTGAT CTTGGGATAA GCAGAGCTAT CAACATTGTA
    CATGTTTTCT TTTTCTGGAT CTTCAATGCG CGTTATCTCA AGGTATGTTG
    GAGTGTTCCC GCTTGTATAA CTAATTAGGG GCTTATGGCT AGTAAACTGT
    TAGCTTTAGA ATTTCAGCAA GTAATACATT AGATAGAATG GAATAGGCCT
    ACAGTGCTTT GTAATAATCA TGTTGTTAAA TTTCTACGTA GACATGAAAC
    AGTGAAATGA CAACTAGAAC ATGTGGCACA TACTTGTTTT ACACTGATAA
    ATATTGAGG

    Gene models with high sequence identity

    1. AT4G34340.1 [+] show detail - TBP-associated factor 8
      E-value: 4e-41; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Bromodomain transcription factor 1e-12
    superfamily Histone-fold 3e-06
    HMMSmart Bromodomain transcription factor 1.20000117458134e-15
    HMMPfam Transcription factor TFIID, subunit 8, C-terminal 5.69999999999999e-15
    HMMPanther PTHR23307 0.000110000029896149

    See the detailed result >

    AT4G34340.1

    Model type
    Protein coding
    Short Description
    TBP-associated factor 8
    Computational Description
    TBP-associated factor 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565), Transcription factor TFIID, subunit 8, C-terminal (InterPro:IPR019473); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR