K29533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29533

Determination of introduced cDNA(s)

  • J013149H23 - Rice Full-length cDNAs - Original: J013149H23

    full reading [+] show sequence

    Nucleotide sequence: J013149H23 - full reading 
    GGGACCGCAT CACTCTCCTT CTCCCCCCCC ACGCCCAGAT CCAGATCCAC 
    CCGGCGCGGC GGCGGATCCG TCGAGGAATA ATGGCTTCCC CGGCGGCGGC 
    GCCGCCGCCT ACCCCGCCGG AGTCCGACCC GCGGCTCGTG GAGGCCTTCG 
    TGCCCTTCCT CGAGAAGCTC ATCAAAAACG CCTCGTGGCG CAACAAGGCG 
    CACTCCAAGC TCTCCCACAC TGCCAAGTCC ATCCTCGACC GCCTCCAGAA 
    CCCGCCGCCG CCGGCGGCTG CGGCGCAGGC ACCGTCCACG CCCACCTCCC 
    CCACGACGCC CACCTCGTCG TCCTCGCAGC CGGGCCCGCT CCGCAGCCTC 
    TCGCTCGCGG ACTCGGAGCT GCTGCTCGGC CCGATCAACT CCGCGCTCGG 
    CTCCGGCAGC GCCAAGCTCG CCGAGGCCGG GCTCGAGCTG CTCCACAGGC 
    TGATCGCGCA CTCCTACATC CATGGCGAGG CCGACCCGTC CGCCGACCCC 
    TCGGCCCAGC TCGTCGCGTC CCTCCTCGAT GCCGCCTGCA ACGCGCTTCA 
    CCTCGACGAC GAGCACATCG AGCTCCTCCT ACTCAAGACG CTCCTCTCGG 
    CGGTCACCTC CACGTCGGTG CGCCTCCATG GAGATTGCCT GCTTCGCGCC 
    GTGCGCGCTT GCTATGATAT GTACCTGGGA AGCCGCAGCG TGGTGAACCA 
    GGCCACTGCC AAGGCGTCAC TCGTGCAAAT GTTGGTGATC GTTTTCCGCC 
    GCATGGAGGC AGACTCCTCC ACAGTGCCCG TGCAACCCAT CGTTGTGGCT 
    GATGTGATCG AGCTGCCTGA AGCTGCTTCT GGTGCTTCGC CTGCCGCTGA 
    TGCCAACTTT GTACAGGGAT TCATCTCGAA GATCATTGGA GACATTGATG 
    GTGCAATCAC ACCTCTGGCA CGGACAACTT CTTCAGCAGC TGCAGGCGCA 
    GGTGGAGCAG CGGCTCATGA TGGTGCATTT GAGACAAGAG CAGCAGAGGA 
    AGGGGCACAT CCAGCAGATT TGCTTGATTC AACAGACAAG GACATGCTAG 
    ACGCCAAGTA CTGGGAGATC AACATGTACA AATCTGCTCT TGAGGGTCGT 
    AAGGATGAGA TTGGTGTGGA GGGGGCAGTG GTGGGCGCTT TGGATGATGA 
    TGCTGATGTG AGGATTGGGA ATAAACTGCG AAGAGACGCT TTCTTGGTTT 
    TCCGGGCATT GTGCAAGCTC TCCATGAAGA CACCACCCAA GGATGCTCCA 
    GCTGATCCCA TTGTGATGCG TGGGAAGATC CTTGCTCTTG AACTTCTCAA 
    GATATTGCTT GAAAATGCTG GGGCTGTTTT CCGGACCAGC GAGAGATTTC 
    TAGGGGCTAT CAAGCAGTAT CTATGCCTCT CGCTTTTGAA GAACTGTGCC 
    TCGGCACATA TGATAGTCTT TCAGCTATCT TGTTCAATTT TTATTAGCTT 
    GGTTTCAAGA TTCAGACCAG GATTGAAGGC AGAAATTGGA GTATTCTTTC 
    CCATGATTAT TCTGAGAGTT TTGGAAAATA TTGCTCAACC AAATTATCAA 
    GCAAAGTTGA TTGTTCTTCG TTTCCTGGAA AAACTCTGTG CTGATTCTCA 
    AATCTTGGTA GACATTTTTC TCAATTATGA TTGTGATGTA CACTCATCAA 
    ACATATTTGA GAGGATGGTT AATGGTCTAC TAAAAACAGC ACAAGGGCCT 
    CCAGCAGGCG TGTCTACCAC ATTGGTTCCG CCTCAGGACA CCACAATGAA 
    AAGTGAAGCC ATGAAATGCT TGGTTGCTAT TCTGAGATCC ATGGGAGATT 
    GGATGAATGA GCAGCTACGC ATTCCAGATC CTGACTCTCC TAAAGTAGAG 
    TCGGAGCAAA ATGATAATGA TGGAGGACAC GAGATTTCCC ACACAGAGGA 
    TAATGGAGAC GAATGTAGTG AAGCATCTGA TTCTCATTCA GAAATGTCAA 
    ATGGGGTTTC AGAGGCTGCA TCTTTGGAGC AGCGCCGAGC TTACAAGATG 
    GAACTTCAGG AGGGTATCTC TCTATTTAAT CGAAAGCCCA GGAAGGGAAT 
    TGAGTTCCTA ATAAATGCCA ACAAGGTGGG GGAATCACCT GAGGAAATTG 
    CGGCTTATGT AAGGAGGTCC TTGAGGTGTA CCTGAGCACT GCAAACCCAT 
    CTCAGCTTTC TGGTGCTCCG CAGCCACTTG GTCATTGGCT TATTCCGGTC 
    GGTTCTTCAA AGCGGGGAGA GCTTGCAGCC CGGGCACCTC TTGTTGTCTC 
    AACCTTGCAA GCTATCAGTG GCCTTGGTGA CTCATCTTTC GAGAAGAACC 
    TTGGCCAGTT CTTCCCCCTT CTTGCTGGTC TGATAAGTTG CGAACATGGT 
    TCAAGCGAAG TGCAGGTGGC ATTGAGTGAT ATGTTTAGCA CTTGGGTTGG 
    CCCGGTTGTT CTTCAAACCT GCTGATGCTG AGCCCCATAT CTGTTATATA 
    GTATATCTCC ACATGACGAG AACTTTGCGG AGCAGCCGAA TTTCTAATCA 
    GTACGTTGCG TCGTTGCATT GTACAGTTTT CAGTTTCGTA TATGAGAGAC 
    TTATAAAGCA TTTCCCTGTA CAGG

    Gene models with high sequence identity

    1. AT1G01960.1 [+] show detail - SEC7-like guanine nucleotide exchange family protein
      E-value: 0; Score: 657.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther F-BOX ONLY PROTEIN 8 6.9e-36
    HMMPanther ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR 6.9e-36
    HMMPanther CYTOHESIN 1, 2, 3, 4 (GUANINE NUCLEOTIDE-EXCH 7.7e-57
    HMMPanther ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR 7.7e-57
    superfamily SEC7-like 2.2e-07
    Gene3D no description 1.7e-07
    Coil coiled-coil 0

    See the detailed result >

    AT1G01960.1

    Model type
    Protein coding
    Short Description
    SEC7-like guanine nucleotide exchange family protein
    Computational Description
    embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR