K29539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29539

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29539

Determination of introduced cDNA(s)

  • J013052H21 - Rice Full-length cDNAs - Original: J013052H21

    full reading [+] show sequence

    Nucleotide sequence: J013052H21 - full reading 
    GAACTGAGTT TTGCATCGTT TGCCAATGGA CGAAACCCTA GCCGACGAAT 
    CCGCCGCCGG CGGCGGCGAG GCAGCCGCGG CGGAGCCAGC GCAGGAATCG 
    CAGCAAGAGA CGCTCGAGGA GGTGCTCTCG AGGCATAGGA AAGAGAAATC 
    CAAACTCCAG GATAAGGAAA CAAGCCTCAA GAAAGCAGCC GCTAAAGGCA 
    GCAAAGCTGA GCAGAAGGCC AAGAAGAAGC AGGTAGAGGA GGAGATTTCA 
    CGCCTCTCAG CTGAGTTAGA GGCGAAACAT GCCGCAGAGC TCGCTACTTT 
    TGGGTACAAA TCCTCAGGCA GCTCAGAAAA GGGGAACATG GACACCTTAG 
    TAAAGGCTAT AGCTGGTGTT TCTGTGACCA GCAACGCGGA TTCCGCGAAG 
    CCTAGCAAGG GTGCACGGCG TCGAGAGAAG AAGGCAAAGG AAGAGGCCGC 
    TAGAGAGCAG CGGATTCAAG AAGAGCAAAA CAATCTTGTC AGTGACCGCA 
    TGATAGAAAA TGAAAAGCTT GAGAAGAAGC TTGAGCCCAT GGGACTGACC 
    ATTCAGGAGA TAAAGCCAGA TGGCCACTGC CTGTACCGTG CTGTTGAGAA 
    CCAGCTGTCA CTCTATTCCA GAGAAACCAC ACAATACAAT TACCAGGAGC 
    TGCGGCAAAT GACTGCCAAT TATATGAAAG AGCATGCGGC AGATTTTCTC 
    CCATTTTTCC TATCAGAGGG CAAGGTCGAG TCTGGACCAG ATCCCTTGGA 
    GAGCTTCAAG AGGTACTGTG AGGAGGTTGA GTCAACTGCT GCTTGGGGTG 
    GGCAACTTGA GCTTGGTGCT CTAACCCACT GCCTGAAGAA GCGCATTGTT 
    GTATACTCGG GCTCATTTCC AGATGTGGAA ATGGGCAAAG AATACAAATT 
    GGATTCAGGT GGTAAAGATG GCCCTAGCAT TAGGTTGTCC TATCACAGAC 
    ATGCCTATGG TCTTGGTGAG CACTACAACT CGGTGGTTCC TGCTTAGTTA 
    TCTAAAAGGG GAAAAAAAGA AATTTAACAG TCTTGGTCTC AGTATGATAT 
    GTTTTCCAGT CATCCAGTGA TAACCGTCTC TTAACACAAT GGATGACTTG 
    CTTACAGCTG CTGTTGTGTT TCCATCTTCT CGTCAATCAA TGATGGTCGA 
    GTCCTTGAGT GTACCAAAGT TTTACCTGGG AATTTACTTC CCAAACAGTT 
    TTGCTTGTAA AACTGAAGTA TGTCTCATTA TCTTAGTTTC CTGTTGAGGC 
    TGTTTTACCA CCTACTAATT TCATCGAGCT ATAATTTGTT ACTGCAATTC 
    TCTGC

    Gene models with high sequence identity

    1. AT3G62940.3 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 6e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Ovarian tumour, otubain 33.481
    HMMPfam Ovarian tumour, otubain 7.6e-30
    superfamily Cysteine proteinases 9.3e-36
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 5.6e-51

    See the detailed result >

    AT3G62940.3

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1).
    Link
    InterPro Scan - TAIR