K29545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29545

Determination of introduced cDNA(s)

  • J023122I17 - Rice Full-length cDNAs - Original: J023122I17

    full reading [+] show sequence

    Nucleotide sequence: J023122I17 - full reading 
    GGACCTCACC GTCTCACCGC CGCATCCCGC TCGCCGGTCA CCGGCTAGAC 
    GCCGCCGTCG CGCGGGCTCC TGGGTTGCCG TGTCTCCATC GCTTCCTTGT 
    TGGCCTGTTC CTGCGAGCTT CGCCCTCTGG CTTCCTCCCT GTTCGGGATC 
    CGGGATCGCG TGTCTGCCTC TCGGCTCGCT GCGCCGCCGC CGCCGCCGGC 
    TCGTCCCGTC TGTGTGTGTG TTTGTGCAGT TGAAATTGGA GTAAATATAC 
    AATGAGGCTG TTGAAAGCGG ATCAGTTGTT CAGGAAAGTC ATTGACGGCG 
    GGTGGAGAAA GCAATCTCGA CTGCTTGGGC TTGACGTTGG TAGTAAGTAT 
    GTTGGGCTGG CTGTTTCCGA CGACAAAAAT AGGATCGCAT TGCCTCTAAG 
    TGTATTGAGC AGGACAAAGA CAAACATCAG CTTGATGGCG GATGATTTCG 
    TAACTTTGGT CTCAAAATAC TCCCTTGCAG GCTTTGTTGT CGGCTATCCG 
    TTCAACTTGC AGGGTCAATC TAGTCCAAAT GCATTACAAG TAAGGCTTCT 
    TGTTGGAGAG CTCTGTAAAA CTGGGAAACT TGATGATATG AGTTACACCT 
    ATTGGGATGA AAATTTTACC TCGAAGTGTG TAGAAGCCCT TTTACATCCT 
    CTGAAACTAC ATGACCCAGT TGAAACCAAA ACAATGACAG ATAAATTTGC 
    TGCGGTTTGC ATACTCCAGC GCTACCTAGA TAATATGAAC AGAGAATTGA 
    GATCTGCAGA TAATTCTGGA AAACAGGGTG ACACCTGAGT TCCACAATGC 
    ATATATTATT CTGTTCGGTG CACACTAAAC CAAAGACAAC GGAATCAGCA 
    TCTGTTCGGT GTACTGCTGC CTTAGTGTAC TGCTGCCTTA TGAAAAAGGC 
    TGTGCAGTTC ATTGAGACAT GTACAAAACC CTGAGTTTAT GCTCTCGTAT 
    ACGCCTGATA AGTTTTGTAG ATGCAGACTT GCAGAGCTGA CAATTCGTCA 
    GCTAGCAAGG GCAGCTTCCC TGCCTGCCTG CTAGAGGCAA TTTGTTGTAG 
    GTGATGCACA AGTACTAGGA ATCTTTTCCC CCTTCCTTTA TTTTCTTGCT 
    TATGAGGCCA TTGGCACCGA AATGCCTGCT TATGCGCAGC TTGAACAATC 
    TCTTCCAATA TGATTGCCGA GCATGCGCGT GTGTATATGA GCCTCTATTG 
    TGTTTCGGGA AAAAAAATGA TTGCCGAGCC AAGAAGAT

    Gene models with high sequence identity

    1. AT3G52905.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 2e-37; Score: 154.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Resolvase, holliday junction-type, YqgF-like 3.2e-06
    HMMSmart Resolvase, RNase H-like fold 2.2e-22
    HAMAP Resolvase, holliday junction-type, YqgF-like 18.214
    Gene3D Resolvase, holliday junction-type, YqgF-like 3e-29
    Coil coiled-coil 0
    superfamily Polynucleotidyl transferase, ribonuclease H fold 7e-30
    HMMPfam Resolvase, holliday junction-type, YqgF-like 1.4e-29

    See the detailed result >

    AT3G52905.1

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, response to DNA damage stimulus, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 4393 Blast hits to 4393 proteins in 1559 species: Archae - 0; Bacteria - 3177; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1190 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR