K29611

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29611

Determination of introduced cDNA(s)

  • J023132L07 - Rice Full-length cDNAs - Original: J023132L07

    full reading [+] show sequence

    Nucleotide sequence: J023132L07 - full reading 
    GACTCTCGGA CTCTCCACTA CTCTTCGCCG CTCGCCGCCT CCTTGCTCTC 
    ACCGCCGGTC ACGACGGCGC CGCCACCCAC CCGGTCCATC ACCTCCTCTC 
    CCGCCGAGCA ACGCTGGAAT GGCCGGCCGC GGAAACGCCA CCGGCTCCAC 
    CCGCACCCGC GCCTCCGTCA ACGTCGTCGC GGTCCACGGT GGTAAAGATT 
    TGTACAAATC CTGCTCGTTG TTCCAAGATT CCGTCGATTG GTTTTCGCCG 
    AAAGAAAAGC AAAATTATTC GCAAAGTGCG GCGGCGATGG AGCTATTCCC 
    CGTCGATTTC CCCTTTCCAC GCCCTCCATT GGCGTTTGGC GCGACGGATC 
    GGCATCAATC CCCCCTCCCC CACGAAGCTT CCATTGGTTC CCCCGCGTGT 
    TCTTGACCCC TTCATCTTCC ATGGATCCGG GCATCTCACT CTCGCTGCAG 
    CCATAGCTCG TCTGGGTGTT CTTGGTCTCC CAAAACCACC AAAGATCAAG 
    CGTTGCACGG TTGCACCTGA GATTCAGAGA GAGGAGGATT GGGAAAGATG 
    GTCGGAGCCA CGGCGAGTGC TTTGATCGGG GTGATGAATC CCCTCCTCAC 
    GAAGCTCTCC GGCCTGCTCG AGAGGGAGTA CGGCAAGCTC AAGGGGGTGG 
    GCCGCGAGGT CGCGCTCCTG CGAGACGAGC TGAGCAGCAT GAACACCGCG 
    CTGGAGGCGG TCTCCGATTC GGAGGAGGAG CCCAGCTCGC AGGTCAAGGA 
    GTGGATGCGC CAGCTGCGGG AGCTGTCCTA TGATGTAGAG GATTGCATCG 
    ACGTCTTCGT GCACCGCCTT GGCCACCATG ACCCCGGCGA CGGGCTCTTC 
    CGCAGGACCA AACGCCGGCT CAAGGCTCTC CGGAGCCGCC ACTGCATCGC 
    AGGCCAGATC GCCGAGCTGA AGGATCGTGC CGTGCTGGTC AATGACCGGC 
    GCAAGAGGTA TGAGTTGGAT GCAGCTGCAT CTAGCTCTGC TGCGATCGCC 
    ATCGATTCCA GGCTGCCTGC GCTGTTCGAG GAGATGGACA GGCTTGTGGG 
    CATCGAAGGT CCAAGGGATG AACTTGTTGA ATTTCTTACG GGAGGAATCA 
    ATTTGGCTCC ACAACGCAGA GTTGTCTCTA TTGTCGGATT TGGGGGATTA 
    GGCAAGACAA CTCTTGCCAA TCAGGTCTAT CAACATATCA AAAGCCAATT 
    TGATCGCACA GCTTTTGTGT CTGTGTCACG GAATCCCAAC GTCAATAAGA 
    TCCTAGCCAA CATACTTATT GGAATTCTCG AGACAAGAAA GCTATCATCA 
    GTTCATCAGA AGCAGCATAG TGACACAATA GAAGATCTAA AGCACAAAAC 
    TTTTGAAGAT TGTAAGCTTA TCAGCCTGAT AAGAGAAAAC CTACAGAATA 
    GCAGGTACTT CATTGTAATT GATGATATAT GGGATAAAGC TGCATGGCGA 
    GACCACCTCC GATTTGCTTT TCCTGAGAAT AACTCTGCAA GCAGAATAAT 
    TACAACTACA CGCATCAATG ATGTAGCTAT AGCTTGTCAC TTCTCACATG 
    AAGATTTTGT TTATGCCATG AAGCCCCTTA GCAGTGAGAA CTCTGAGGCA 
    TTATTTTTTA GAAGAATCTT TAGCTCCAAG GAGAAATGCC CCCCTGAATT 
    GGAAGAAGTT GCTGATGATA TACTTAAAAA GTGTGATGGT TTGCCATTGG 
    CCATAGTTAG TATAGCTAGC CTTTTATCAT GTAAACCAGT TACGAAGCAG 
    GAGTGGGTAT GGGTGCTGAA CTCCTTTGGT TCTACAGTTA TGAAAGATCA 
    GGGGTCACAC GAGTTGGCAG TAGTGAAGAG GATACTATTT CTTAGTTACA 
    GTGATCTACC TCACCACTTA AAGTCTTGTC TTTTGTATTT AAGCATTTTC 
    CCTGAGGATC ATACAATTAC TAGAGATTTT TTGATATCGA GATGGATCGC 
    TGAAGGATTC ATTACTGAAC AACGAGGAGA GAGTTTAGAG GAAGTGGGAG 
    AAAAATATTT TAATGAGCTC ATAAATAGGA ATATGGTTCA ATCATTTGAG 
    ATTGACCCTT TTAGTAGAAG AGAGGCCTAT CGGATGCATG ATATCATGCT 
    TGATCTTATG ATATCTCTGT CTACTGAAGA AAATTTTGCA ACTATACTGG 
    ATGGTCAGCA CTGTGCACCA TCATCCAACA AGATTCACCG TTTCTCCCTC 
    CAATGTAAAA GTGTGGAAAG GATCACGTGG CTGAGAACCA CTAGTTTTTC 
    TCATGCTCGG TCGCTCTCTG TCTTTGGTGA TTTTAACAAG ATACCCCCTC 
    TTGTGGACCT TGAAGTTTTA CGAGTACTAG ACCTCTTGAA TTGCTCTAGT 
    TTGAAGGATG ATCATATCGA GAATATTGGA AGTTTATTTC AACTGAGGTA 
    TGTCAGACTT GGAAATATTA GCAGGATACC AAGGCAAATT GGGAAGCTAA 
    AGCTCTTGCA AACACTGGAC CTAAGTGGAA CAGCGGTAAA GAAGTTACCT 
    CAATCTATTG TTCAACTGCT CCAATTGGTC CGCCTTTTTC TGCCTTGGCG 
    TGTAGAATTG CCAAATGGAA TTGGTAACAT GGAAGCTCTT CAGGTGCTAT 
    CAGTGTTCGA TGGCACTGAA AACACATCAG CTATCATTCA AGAGCTCGGT 
    AACCTAACCA AACTGAAGGA TCTTGATGTG TACTGGAATT GCAACGACAC 
    AGAAAGTGGT CATGAAGTGT ACATCAACCA TTTAGTCAGA TCTCTCTGCA 
    AGCTAGGTGG ATTTAACCTT CAGTCTCTTT GTATTCGGAA TATATACCCC 
    TGTTCCTTAG ATATCTTGGC TGAATCGTGG TCCCCTCCTC CACGTCATCT 
    TCAGACATTT CAGACTGATA TGGGCTGTTA TTTTTCTAGT CTTCCAACAT 
    GGATGTCCTC CCTCTCTGAG CTCACCTGCT TAAGAATACA CATGAAGAAG 
    GTGGGAGAGG AGGATCTCCA GGTTCTCAAG TGCTTGCCTG CCCTGCTTCG 
    TCTCGATCTA TACCCAGGGT ACCCCAAGCA TACTCTCAAA GTTAGCTGCA 
    GTGGATTCTC ATGCCTGAAG GAATTTACTT ATGGTCCATC CTATGTTGAT 
    CTGGCTTTGA TCTTGCGTCA TCAGTCAACT ATCAAAAATG GACTTGGTAT 
    GGGTGTGATG TTTGAAGCAG GGGCTATGCC GAAGCTCCAG CAGCTTGAGT 
    TTGGTTTCAA CGCACATGAT ATGGTATCTG CGTATGGAGC TGGACTCGAT 
    TTTGGCATCC AGCACTTTGC CTCCCTCAGG CATGTTCGTG TCTTCATCGA 
    CTGTAGGGAT GCAAGTGATT GTGAGATGGA GGCTGCACTG GCTGCAACCG 
    CTAACTCGGT TTCTCTCCGA GGAAGCTACC ACGTTGAAAT TCGTAGAATT 
    TTAAAGAATG TGGAAAATGA TGAGCAGAGC TGACTTGGGA CATCATACAA 
    CATGGAACTA AACATAAAGT TTCCAGCCAA AATCGAGATG CCAATATGGT 
    TTGGTAATAT ATTAATCTTC CTCTTAAACC GTCTATTGTT ACATTGTTCC 
    TTAGCTCTTT CTTTTTCTTG TTTCTGTTTT CAGTTGAAGT AAAATACTAA 
    AGTGTTTTGG ATACCC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 9e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NB-ARC 7.3e-64
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2, LRR 2.7e-06
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2.7e-06
    FPrintScan Disease resistance protein 6.5e-18
    FPrintScan Disease resistance protein 6.5e-18
    FPrintScan Disease resistance protein 6.5e-18
    FPrintScan Disease resistance protein 6.5e-18
    Gene3D no description 1.9e-05
    superfamily L domain-like 2.5e-26
    superfamily P-loop containing nucleoside triphosphate hyd 6.9e-16

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR