K29612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29612

Determination of introduced cDNA(s)

  • J013042C23 - Rice Full-length cDNAs - Original: J013042C23

    full reading [+] show sequence

    Nucleotide sequence: J013042C23 - full reading 
    GTGCGGCTCA TGGAGATGAA GGAGATGAAT GCAAGGATGG GAAATGGAGA 
    AAAAACCCCA TGCATATCAG ATGTCCAAGA CAACCGATGT ATGACAATAC 
    AAATTGAACC AACGGATACC AATCAAGCAA AGAAAAGTCC CAAAGTGAAG 
    ATTGTTACAA GAGATGCCTC ACTTCTTGCA GGAGATGGAG ATATTACAAG 
    AAAATCGCTT GGACCAATAA AGGTATTCTC TGAGAAGGAC CTATCAAGAG 
    AAATAGAAAG AGTAGCATCT ACTTTACATC CAGATAATGA ATGGGCAATA 
    CGAATAACTG CAATGCAAAG AGTGGAAGGC TTAGTTCTCG GAGGTGCTGC 
    CGACTATTCA GCCTTCCCTA TGCTCCTAAA GCAGCTTGTG ACCCCACTCA 
    TAACCCAGAT TCTGGATAGG AGATCAAGTG TTGTGAAACA GGCATGCCAT 
    TTGCTAAATT TCTTATCAAA AGAACTGCTA CGTGACTTTG AACCGTGCGC 
    TGAACTGCTT ATTCCGGTCC TTCTTAAGAA TGTTGTGATC ACTATTCATG 
    TAATTGCTGA GTCCTCGGAT AATTGTATAA AAGAGATGCT GCGGAACTGC 
    AAAGTAGCTC GTATTCTACC AAAAATTATT GAATTTGCAA AGAATGATAA 
    AAGTGCAGTT CTCCGTGCCA GGTGTTGTGA GTACGCAATA TTGATGTTGG 
    AGTTATGGGT TGATACTCCA GAAATACAGA GATCAGTTGA TCTGTATGAA 
    GAATTCATAA AATGTTGTAT AGAAGATGCA ACTAGTGAGG TCCGATCAAG 
    TGCTAGAGCA TGCTACAGAA TGTTTTCAAG GATTTGGCCT GAACGTTCGC 
    ATCAGTTGTT TTCATCGTTT GAATCATCCA GGCAGAAAAT GATAAATGAT 
    GAAGATGCTG AGACACAGCA AAGGCATCTT TCTCCTGTAG AAAGAGTTAA 
    ATTGATGCAG CCTCAATCTA GTTCTTGTAA TTCAACTGAA ATTGACAAAG 
    TTGTCAAGGT CGATTCTGGA ACATCGTTTT CTTCTGTAGA CCTTCAATCA 
    GTACAAGTGA AAGCATCCGT TCAGCATGAT GATATGACCT CAAAAATTCA 
    GCCTGAAGGC AAAACTGATG GCACTACAAC TACTGGAAGT TCATTTAAAG 
    ATACCAGTAC GTTAGAAAAA GAAACAAGCC CAGACAAAGG CCCTGATCCT 
    GATAAATGTG ATTCAGGTGT CAATTTATCA TCTTGTGATC CATCCTCTGC 
    CACTCAATTT ATACTAGAAC CTACTTCAGA ATTGCTACCG TCTGATGCAA 
    CTGTTGTAAC AATTGTTCAA GACAAGGCTG AATGCAGGCC AAATACTGAA 
    CAGCTGACTC AGCAAGTTCA AGTTTTGGGA CATCCCTCTG ATCTGCTGAA 
    CCGTTCACCT CCTGTTAGTT TGAAAGAATC AGGAAACTCG CTGAAACATA 
    ACCCTATTCA AGTGAACTTT GATGGTAGCT CAGGTGGAAA ACTAGGAGCT 
    CAGAAAGTGA AGCATCATAC TAGCGCTCCT AATAAGAGTG TTGTTCGTAA 
    GGAGCCGCGG AACAATTACA TTCCCAACTT CCGGCGTCCT CTCTTGAGTA 
    AGCAGATGAC AAACTGGTTT TATGCCAGTA ACAGAAGTGA TTTAGATGAC 
    AAGCAACTCA TTTTGGGTGA AATGGTCAGC AACATGGATG TGCCCTCCTC 
    TCTCACCGAG GCACTTTCTT TGGGTCTTAA ACCAAAGTCA GATTGGATGA 
    TGAGGGTATA CGCATTCAAT TTCTTAAGAC AATCTTTGCT AGAGCAGGGA 
    CCAAGAGGCA TTCAGGAGGT TGCACAAAAT TTTGACAAGG TTATGAGGTT 
    TGTTAGTCGT TACCTGGCTG ATCCTCATCA TAAAATAGCA CAGGCTGCTC 
    TCTCATCACT TTCAGAGATC ATGCCAGTTT TTAAGAAGCC TTTTGAACAT 
    TATCTGGACA AGACTCTGCC TCATGTTTTC TCTCAGCTGA ATGATCCAAA 
    GGAATCCATC AAGCAGCAGT GCTCAGCAAT TTTGAAACTT GCAGGTGAAA 
    TCTATTCCAT TGATTCGCTC TTACCGGCCC TACTTCGTAC ACTAGAAGAA 
    CAGAAATCTC CCAAGTCAAA ATTGGCAATT ATTGAGTTTG CAAACTCTTC 
    TTTTGTAAAA TGCACAGTCA GTTCTGACAA CTATTCTAGC AGCAGCTTCC 
    TTAAGCCATG GCTTGAAAAG CTAGCTCTTT TGTTCAAGGA CAAAAACAGT 
    AAGCTAAAAG AGGTTAGCGT TGCTGGTTTC TCATCAATCT ATTCTCACTA 
    CGATCCTGCA TCTTTGTTAA GCTTTCTAGT TAGCTTGTCA ATGGAAGAAC 
    AAAAGAGATT AAGACGGGCA ATAAAGCAGT TGATCCCTAC AATAGAGAGC 
    GACTTGGAAG AGTTTTTGCA ACAAAGGAAA CATAAGCCAA AGGTGCCACT 
    ATTTGATTCT TTTGTTGGTG CATATCAACC TTATGCTAAA GGTTTAGTCA 
    TAAAGCAAAA TAAGCACCAT CTGCATGCCA CATATCAGTC TGATTGCCTT 
    CAGGCTGATG ATGTGTTCGA TTCTGCACTC CACTGTCTCC CAAGAATTTC 
    TTTGGAAGTT CGTGAGCGAC GCGCTGGGAA AATTGAATCT GAATCTTACG 
    ATGAATCTAA TGGTCATGAT GCTGAAATGA TGGACAAGAA ATCTAGTGAT 
    ACAAGGTCGA GTGACCCCCC TAGAACATTT GATTATAATG TGATATCAGA 
    TAACACAGTT GAGAGTCCAA GAAAAGAGGG TACTGACATC AAGAGATTTG 
    AGGAATCAAA CGAGAGTGAA CTGAACATAA CTGTCAGAAA TAGGAATGTC 
    ATATTGAATA GCTGTCAAGA TCATGGACCA AGCATTTCCA GGACATATCA 
    TCAGGATGAA ATGAGTCAAA TGGAAGAAGT TCCAGAGATA AATGGCCCTT 
    CCGTGTCAAT CAAGAATTTA CAACAGATGT CCTCTTCTCT ACTTGAGATG 
    CTTGATGATC CAGAGGAATC CACCAGAGAG CTTGCACTTA CTCTATTGGT 
    TGAAATTCTT GAAAAGCAAC GAAAGGCAAT GGAGAACTGT ATCGATACTC 
    TTATAGTTAA ATTGCTGCAT GCAACCAAAG ATGCTGCCTT GAAGGTTGTA 
    AATCAAGCCC ATATCTGTTT GACAACGGTG GTTACTCAAT TTGATCCGCT 
    GACATGCCTA AGAGCAATTG CTTCTCAGTT GGCCAACCAG GATGAAAAAG 
    TTCTTATTGT CAGCATCAAC AGTTTGAGCA AGCTTGTTAT TCGATTATCA 
    CAGGACAATC TTATGGCACA TTTGTCGATA TTTCTTCCTG CACTCCTGGA 
    CGCCTTCGAA AACCATAGTC CATATGTCCG CAAGGCTGTG GTGTTGTGCT 
    TGGTGGATAC GTACCTGAAG CTCGGGCCAG CGTTCTTGCC GTATTTGGAG 
    AGGCTGGACA GCGCCCAGCT GCAGCTGGTA ACCACGTACG CCAGCAGGCT 
    GTCCCAGACG AGCTTTATTG CTGTGGACGC TTGATGCAGG CAACCCAGCA 
    GCAACAGCAG CAGCAGCAGA AGACGCAATG CTTGTTTCAA CGATAACTCT 
    CCACCGTTGG TTAGCCTTAG CCTTCTCTTT CTTTTTATTT ATGGCCATGT 
    GTGCACAATA AGGGCAGCAG CTCAGCTCTC TCCCCCTTTC TCCAAATTTA 
    TGAGCATAGT AGAATAGATC TCTATACTGT AAATCATAAT TACCTGTTTT 
    TACTACCCAG AAATGAGATA CATGCATGTA GGCAGTGCAG ATTGTACAAC 
    CAATGGAAGA ATAGTAGTAC TAGCATTTTC ATCCTGTTTG CTACAGCTTA 
    TGTGATCTAA AGGAAAGGAA GAAAAAAATA TAATGGGTGT GCAGTTC

    Gene models with high sequence identity

    1. AT2G20190.1 [+] show detail - CLIP-associated protein
      E-value: 0; Score: 820.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 2.3e-45
    HMMPfam CLASP_N 2.2e-54
    HMMPanther gb def: Hypothetical protein At2g20190 5.8e-266
    HMMPanther CLASP 5.8e-266

    See the detailed result >

    AT2G20190.1

    Model type
    Protein coding
    Short Description
    CLIP-associated protein
    Curator Summary
    Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.
    Computational Description
    CLIP-associated protein (CLASP); FUNCTIONS IN: binding; INVOLVED IN: mitosis, protein stabilization, cell growth; LOCATED IN: spindle microtubule, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR