K29646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29646

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29646

Determination of introduced cDNA(s)

J033047I05 - Rice Full-length cDNAs - Original: J033047I05

full reading [+] show sequence

GGCCGCAAAA CCCTTCTCCC GCCGCCGCCA TCGCCGCCGC CATGGACCCC 
TCGCAGCCGT CCGGGAGCTC CGCCGACGCC TCGGCGTCCT CCTCCTCCTC 
CTCCTCCTCC TCCGCCGTGG AGAATCTCGC CGCGGGGATG GCGGCCATGA 
GCCTCCAGGA TCGGTTCGAG TTGCTGCGGG GGATCGGCGA GGAGTGCATC 
CAGGAGGACG AGCTCATGAA CCTGCTGCAG AAGAAGCCCG TCCCCATCTG 
CTACGACGGT TTCGAGCCCT CCGGCCGCAT GCACATTGCT CAGGGCATTG 
TGAAGACAAT CAATGTTAAC AAGATGGTCA GAGCTGGATG CAAAGTGAAA 
ATTTGGATAG CAGACTGGTT TGCTCAGCTA AACAACAAGA TGGGGGGTGA 
TATAAAAAAA TACAGACTGT GGGACGCTAC ATGATTGAGA TTTGGAGAGC 
GGCTGGTATG AATCTTGATG GTGTGGAATT CTTGTGGTCC TCAGAGGAAA 
TCAATAAGCG TGCAAATGAA TATTGGCCAC TTGTAATGGA CATTGCTCGT 
AAAAATAATG TCAAAAGAAT AATGAGATGT TGTCAGATTA TGGGTCGGAA 
TGATTCGGAT GAGTTGACTG CTGCCCAGAT CTTCTATCCT TGCATGCAGT 
GTGCTGATAT ATTTTTCTTA AAGGCAGACA TTTGCCAGTT GGGCATGGAC 
CAAAGGAAGG TCAATATGCT AGCCAGGGAG TACTGTGATG ACATCAAAAG 
GAGAAACAAA CCAATTATTC TGTCACATCA TATGCTCCCT GGTTTTAAGG 
AGGGCCAAGA AAAGATGTCA AAGAGTGATC CATCCTCAGC CATTTTTATG 
GAAGATGACG AGGCTCAGGT AAATTTGAAG ATAAAACAAG CATTTTGCCC 
TCCCAACATT GTTGATGGCA ATCCATGCTT GGAGTACATC AAGTACATTG 
TTTTCCCTTG GTTTGAAACG TTTGAGGTGG TTCGGAAGGA AGAAAATGGC 
GGTAACAAGA CATTTGCCAA CATGAATGAA CTCATCGCTG ATTATGAGAG 
TGGTGCTTTG CATCCTGCTG ATGTTAAACC AGCTCTTGCA AAAGCGATAA 
ACCAAATATT GCAGCCTATC CGTGACCACT TCAAAAACAA CAGTGAAGCA 
AAAGTTCTGC TCAACACTGT TAAGAATTAC AAAGTAAAAA CGGAGGATAC 
TAGTTCAAGC CCTCAAGCAT CTTAAGAGTT CATGATGGTC TACATGGATA 
TCTTTTAACT TTGTTTACAT TATGCAGTTG TGTGATACAC ATTCTCTTTT 
GGTTAGTGTT ATGTACTTTA AATGTTCATG ATCACCTTAT ACCGTTATAG 
TATGAGAAAA AAGGCAAAAG TTTTGAGTGC AGACAGTGGA AATGCCTTGT 
TGATACCAAA CATTTGTTCT GCTCTGCATC TGCACAACCA CTAAGGTCTT 
ACCTTTGTGG AAAGAAATAT TAACTGGTGA AGCCCTGTTT GGAATC

Gene models with high sequence identity

AT2G33840.1 [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
E-value: 3e-153; Score: 151.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Rossmann-like alpha/beta/alpha sandwich fold	1.7e-32
Gene3D	no description	5.3e-43
Gene3D	Rossmann-like alpha/beta/alpha sandwich fold	1.4e-23
HMMPanther	Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic	1.3e-33
HMMPanther	ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION	1.3e-33
HMMPanther	Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic	3e-103
HMMPanther	ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION	3e-103
HMMPIR	Tyrosine tRNA ligase, archaeal/eukaryotic	1.1e-129
HMMPfam	Aminoacyl-tRNA synthetase, class Ib	2.1e-45
HMMPfam	Aminoacyl-tRNA synthetase, class Ib	5.5e-11
superfamily	Nucleotidylyl transferase	1.5e-70
superfamily	Nucleotidylyl transferase	3.3e-18

See the detailed result >

AT2G33840.1

Model type: Protein coding
Short Description: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
Computational Description: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT1G28350.1); Has 5443 Blast hits to 5419 proteins in 1791 species: Archae - 389; Bacteria - 3121; Metazoa - 323; Fungi - 286; Plants - 124; Viruses - 5; Other Eukaryotes - 1195 (source: NCBI BLink).
Link: InterPro Scan - TAIR