K29718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29718

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29718

Determination of introduced cDNA(s)

  • J023131B06 - Rice Full-length cDNAs - Original: J023131B06

    full reading [+] show sequence

    Nucleotide sequence: J023131B06 - full reading 
    GGCTGTCAGC CTCAGCCAAA CTCTTCTCTT CTCTTCTGCC TACTTCCCAC 
    GCCACCCCCA CCCTCGCCGC CGATTCCGAT TCCGATTGCG CTCGCCCATG 
    GCGGCCGCCG CTCTCCGCGA CCAGCTCACC GCTCTCCTCT CCTCCATGTT 
    CTCCCAGGGT TTGGTGGACG AGCAGTTCCA GCAGCTGCAG ATGCTGCAGG 
    ACGAGGGGGG CACCCCGGGC TTCGTCTCCG AGGTCGTCAC CCTCTTCTGC 
    GACGACGCCG ACAGGATCAT CAACGAGATC GCCACCCTGC TGGAGCAACC 
    CGTCGTCAAC TTCGATAAGG TCGACGCCTA CGTTCATCAG CTCAAAGGCA 
    GCAGCGCCAG TGTTGGTGCT CAGAAAGTGA AGTTCACTTG CATGCAGTTC 
    CGTCAGTTCT GTCAGGACAA AAGCAGAGAT GGGTGCCTTA TGGCATTGGC 
    TGTTGTGAGA AACGACTTCT ATGATCTGCG CAACAAGTTT CAGACTATGC 
    TTCAGCTGGA GCAGCAAATC CAGGCTTATG ATCCCAAGCA GCAATAATTG 
    AAGCAAAAGA GTGTAGCTGC ATGTGATCTC ACATGATAAA TGTATCTTTG 
    AAGATGTAGA CCATGTTCAA TGGGCTTCTG GCTTAGAGTG TGTGCGCGTG 
    TGCAGAATCA AATCATTTGG TTTGAGGCTT CATGCTTCCA ACTTTGAGCT 
    CATAACCCTT TAATTGTTAG TGACAACTGA TCGTCTAGTG TCGATGTACC 
    TGTTACCTGT CTGTGTTCGG TTGTCTGCCA CCTTTGCAAA CTCTTACTGG 
    TTGTCTGGTG ACTTGTTTAG CTGGCTTGTG ACTTTAGGAA GGGAAAGTGT 
    GTGAAATTGC ACCATAATTT CTGACTTAAG AGTTGTGAAG TCTTGATGCT 
    GGGTGGTATA CAAGTCTATA AACAACGATC ACCCTGTTTA ATATCAACAT 
    GAACAAGCAT CCGTATTCAG TTTTGAGAAT TTCATGTTGT TGTGCATGTC 
    GTCGG

    Gene models with high sequence identity

    1. AT3G21510.1 [+] show detail - histidine-containing phosphotransmitter 1
      E-value: 7e-33; Score: 138.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1.2e-24
    ProfileScan Signal transduction histidine kinase, phosphotransfer (Hpt) domain 12.764
    Gene3D no description 1.7e-05
    HMMPfam Signal transduction histidine kinase, phosphotransfer (Hpt) domain 6.5e-13

    See the detailed result >

    AT3G21510.1

    Model type
    Protein coding
    Short Description
    histidine-containing phosphotransmitter 1
    Curator Summary
    Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
    Computational Description
    histidine-containing phosphotransmitter 1 (AHP1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 358 Blast hits to 357 proteins in 69 species: Archae - 2; Bacteria - 42; Metazoa - 0; Fungi - 41; Plants - 268; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR