K29747

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29747

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29747

Determination of introduced cDNA(s)

  • J033121C04 - Rice Full-length cDNAs - Original: J033121C04

    full reading [+] show sequence

    Nucleotide sequence: J033121C04 - full reading 
    GCCCATTTCC TCTTCTTCTT CCTCCATATC ACACGGTTTT CGTCCATCGA 
    TCATCAGAGC TCGATCGGGC GCCATGGATG GGGAGGAGGA CAGCGAGTGG 
    ATGATGATGG ACGTTGGAGG GAAGGGCGGG AAGGGCGGCG GCGGCGGCGG 
    CGCGGCGGAC AGGAAGAAGC GGTTCAGCGA GGAGCAGATC AAGTCGCTGG 
    AGTCCATGTT CGCGACGCAG ACCAAGCTGG AGCCGAGGCA GAAGCTGCAG 
    CTCGCCAGGG AGCTCGGCCT GCAGCCTCGC CAGGTCGCCA TCTGGTTCCA 
    GAACAAGCGC GCGCGGTGGA AGTCCAAGCA GCTCGAGCGC GAGTACTCCG 
    CCCTCCGCGA CGACTACGAC GCCCTCCTCT GCAGCTACGA GTCCCTCAAG 
    AAGGAGAAGC TCGCCCTCAT CAAGCAGCTG GAGAAGCTGG CGGAGATGCT 
    GCAGGAGCCA CGGGGGAAGT ACGGCGATAA TGCCGGGGAC GACGCGCGGT 
    CGGGCGGCGT CGCCGGCATG AAGAAGGAGG AGTTCGTCGG CGCGGGCGGC 
    GCCGCCACGC TCTACTCGTC GGCCGAGGGT GGCGGGACGA CGACGACGAC 
    GACGGCCAAG TTGATGCCCC ACTTCGGCAG CGACGACGTC GACGCGGGGC 
    TCTTCCTCCG GCCGTCGTCG CAGCATCATC CGCCGCCGCC GCACGCCGGT 
    GCCGGCTTCA CGTCCTCCGA GCCGGCCGCC GACCACCAGT CCTTCAACTT 
    CCACTCGAGC TGGCCGTCGT CCACGGAGCA GACCTGCAGC AGCACGCCAT 
    GGTGGGAATT CGAGAGCGAG TGAGCATCCA CACTGTTACT ACTAGGCTAC 
    TCATGGATGA TCCATCGATC GCCACAGATC ATGCATGCCA CGATCAGAAT 
    TTCAATTCGC CGCGAGGACG GATCAAACCT GTACTAGATC GGATCAGAGC 
    AAACATAGCA GAGAAGATGA TCAGACCAAC AGTGATGTGT ACATAGCTTT 
    CTGTAGATCA AAACCCCAGG CAGTCTCCTC TCCATCCAGC CATCAGCATG 
    CGAAAATTCT CTCTCTCTTT TTTTCCCCTC CAAGTCTTAC TCGACTTCGA 
    TGTTGTTATC ACAACACCAC ATCATGTAAT CCAGCAACAC GCCGAGATGA 
    AAAAAAGGTT AAAAAGCTTA TAGAGTTCGT TC

    Gene models with high sequence identity

    1. AT2G46680.1 [+] show detail - homeobox 7
      E-value: 3e-34; Score: 142.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 2.9e-19
    FPrintScan Helix-turn-helix motif, lambda-like repressor 9.6e-06
    FPrintScan Helix-turn-helix motif, lambda-like repressor 9.6e-06
    HMMPanther HOMEOBOX PROTEIN PRH 1.7e-12
    HMMPanther HOMEOBOX PROTEIN 1.7e-12
    HMMPfam Homeobox 6e-17
    HMMPfam Leucine zipper, homeobox-associated 1.6e-11
    PatternScan Homeobox, conserved site 0
    ProfileScan Homeobox 17.103
    HMMSmart Homeobox 1.8e-16
    Coil coiled-coil 0
    Gene3D Homeodomain-related 1.3e-16

    See the detailed result >

    AT2G46680.1

    Model type
    Protein coding
    Short Description
    homeobox 7
    Curator Summary
    encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.
    Computational Description
    homeobox 7 (HB-7); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 12 (TAIR:AT3G61890.1); Has 11865 Blast hits to 11755 proteins in 611 species: Archae - 0; Bacteria - 26; Metazoa - 9035; Fungi - 216; Plants - 2052; Viruses - 14; Other Eukaryotes - 522 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR